Microbacterium paraoxydans: IZR02_03215
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Entry
IZR02_03215 CDS
T08796
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpao
Microbacterium paraoxydans
Brite
KEGG Orthology (KO) [BR:
mpao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpao03016
]
IZR02_03215
Enzymes [BR:
mpao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
IZR02_03215
Transfer RNA biogenesis [BR:
mpao03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
IZR02_03215
Prokaryotic type
tRNA splicing ligases
IZR02_03215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QXE30534
LinkDB
All DBs
Position
complement(694186..695355)
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AA seq
389 aa
AA seq
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MERLSARLLSWASLIDEKTLDQARTTSRMPFIHPHLALMPDAHLGKGATVGSVIPTLGAI
IPAAVGVDIGCGMIAVRTPFTKDDLDGRDLAALREQIERAIPLSAGRYNNKVVATAAPRI
AELEERARAAEFDPEGYAKNWRLQLGTLGSGNHFIEVSVDELDRVWLFLHSGSRGVGNKI
AGHHIAVAQRLAKQWWIDLPDPDLAYLVEGTPEFTRYIRELRWAQHFALLNREEMMDRVI
RQLSDFLGAPVEEEERINCHHNFTESEMHFGKRVWVSRKGAIQADAGRPGLIPGSMGTAS
YVVEGLGDPLSLNSSPHGAGREYSRSAARKTFTHAQLREAMAGIEFRDTDAFIDEIPQAY
KPIDRVMEDAASLVRIRHTLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctctccgcgcggctgctgtcgtgggcgtccctgatcgatgagaagaccctc
gatcaggcccgcaccacctcacgcatgccgttcatccacccgcacctggcgctgatgccg
gatgcgcacctcggcaagggcgcgaccgtcgggtctgtcatcccgacgctcggcgcgatc
atccccgcggccgtcggcgtcgacatcggctgcggcatgatcgccgtccgcacgccgttc
acgaaggacgacctcgacgggcgcgacctcgccgcgctccgggagcagatcgagcgcgcg
atcccgctgtccgccgggcgctacaacaacaaggtcgtggcgaccgccgcaccgcgcatc
gccgagctggaggagcgagcacgtgcggccgagttcgaccccgagggctacgcgaagaac
tggcggctccagctcggcacgctcggctcggggaaccacttcatcgaggtgtcggtggac
gagctcgaccgggtctggctgttcctgcattccgggtcccgcggcgtgggcaacaagatc
gccgggcaccacatcgcggtcgcgcagcggctggcgaagcagtggtggatcgatttgccc
gaccccgacctggcctacctcgtcgagggcacgccggagttcacgcgctacatccgcgag
ctccggtgggcacagcacttcgcgctgctgaaccgcgaggagatgatggaccgcgtcatc
cggcagctctccgacttcctcggcgctccggtcgaggaggaggagcggatcaactgccac
cacaacttcacggagtcggagatgcacttcggaaagcgcgtctgggtgtcccgtaagggc
gcgatccaggcggacgcgggtcggcccggactcatccccgggtcgatgggcacggcatcg
tacgtggtggaggggctcggcgacccgctgtcgctgaactcctccccgcacggtgccggg
cgggagtactcgcggtccgcggcgcggaagacgttcacccacgcgcagctgcgggaggcg
atggccggcatcgagttccgggacaccgacgccttcatcgatgagatcccccaggcctac
aagcccatcgatcgggtgatggaggatgcggcgagcctggtgcggatccggcacacgctg
cgacagctcgtgaacgtgaagggcgactga
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