Mycobacterium sp. JS623: Mycsm_04208
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Entry
Mycsm_04208 CDS
T02423
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msa
Mycobacterium sp. JS623
Pathway
msa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mycsm_04208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msa03019
]
Mycsm_04208
03009 Ribosome biogenesis [BR:
msa03009
]
Mycsm_04208
Enzymes [BR:
msa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mycsm_04208
Messenger RNA biogenesis [BR:
msa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mycsm_04208
Ribosome biogenesis [BR:
msa03009
]
Prokaryotic type
rRNA processing factors
Mycsm_04208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AGB24459
UniProt:
L0IZG0
LinkDB
All DBs
Position
complement(4124625..4127435)
Genome browser
AA seq
936 aa
AA seq
DB search
MAEDAPNQDLSEETQPSGDQPQELTDSQAEHPAEDAPSDEVSGASHDSANSEESGDAEES
EDSAEAEPESRLILETAPEAERADYLPLFMAPQPVQASYDPDADDDEDDEDDDGGPDSDD
DQGDRPAARRRRRGRRGRGRGRGEQSDDSDDNESGDGQADAKRDDDSNDDSDEDGGDEEG
GTEGATRRRRRRRRRKSGSGDDSDEASSPDDPPNTVVHERAPRRSSKADTDGGNGEIQGI
SGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFLARREAVERTMVVRDKVRTEPPHEGARY
TQIAVMEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV
NWEAAGLGGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASST
GISRKLPDTERQRLKEILREVVPADAGVIIRTASEGVKEEDIRTDVERLQKRWTEIEAKA
AETTEKKAGAAIALYEEPDVLVKVIRDLFNEDFSGLIVSGDDAWNTINEYVNSVAPELLP
RLTKYETAEDGPDVFAVHRIDEQLTKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTG
SGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTESLARD
RTRHQVSEVTSLGLVQLTRKRLGTGLIEAFSTPCPHCAGRGIMLHGDPVDSVSAGSRKSD
TGGRRGKRGKKGAKADDVPVAKVPAHPAGEHPMFKAMAAANGKHEHGDEDTDGEVDETKA
AKEVAELEPDTIREAYVEAEDEELEDEDFDESDEDESDEDESDEDESDEDESDEDEIDLD
ADDEDDDIDDDIEVINGDTDDDTESDDDEYDDDDTDEDDDSDDDSDDEHSDDDESDEDDS
DEDDDNVHQPAAVSAAGGRHRRRAAMRPAGPPTHDG
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagatgcgcctaaccaagacctatcagaagagactcagcccagcggggaccag
ccacaggagctgacggactcgcaggccgagcatcccgccgaggacgccccctccgacgaa
gtgtccggggcctcgcacgactcggcgaactccgaagagtccggtgacgctgaggaatcc
gaggactcggcggaggccgagccggagtcgcggttgattctcgagacggcgcccgaggcc
gagcgggccgactacctaccgttgttcatggcgccgcaaccggtccaggcgtcctacgat
cccgacgccgacgatgacgaggacgacgaggacgacgacggcggaccagactccgacgac
gaccagggggaccgaccggctgcccggcgccgccgtcggggccgtcgcggtcgcggacgt
gggcgtggtgagcagagcgacgactcggacgacaacgagtcaggcgacgggcaggccgac
gccaagagagacgacgattccaacgacgattcggacgaagacggcggcgatgaggaaggc
ggcaccgagggtgccacccgtcggcgtcgccgtcgtcggcgccgcaagtccggttccggg
gacgacagcgacgaagcttcatcgcccgacgatccgccgaacaccgtggtgcacgagcgc
gcgccgcgtcggtcaagcaaggccgacacggatggcggcaacggcgagatccagggcatc
agcggatccacccggctcgaggccaagcggcagcggcgcagggatggccgcgacgcgggc
cgacgccggccgccgatcctgagcgaggccgaattcctggcgcgccgcgaggccgtcgag
cggaccatggtggtgcgcgacaaggtccgcaccgagccgccgcacgaaggcgcccgctac
acgcagatcgcggtgatggaagacggcgtcgtcgtcgaacacttcgtcacctcagccgca
tccgccagcctggtcggcaatatctatctcggcatcgtgcagaacgtgctgccgtcgatg
gaggccgcgttcgtcgacatcggccgcggccgcaacggcgtgctgtacgccggcgaggtg
aactgggaggccgcaggcctcggtgggcagaaccgcaagatcgaacaggccctcaagccg
ggcgactacgtcgtcgtccaggtcagcaaggatccggtcggacacaagggcgcgcggctg
acgacgcaggtgtcgctggccggccgctacctggtctacgtgccgggagcgtcgtcgacc
ggcatcagccgcaagctacccgacaccgaacggcagcggctgaaggaaatcctgcgcgag
gtggtgcccgccgacgccggcgtgatcatcagaaccgcgtcggagggcgtcaaggaagaa
gacatccgcaccgacgtcgagcggctgcagaagcgctggaccgagatcgaggccaaggcc
gccgagaccaccgagaagaaggccggcgccgctatcgcgctttacgaagagcccgacgtg
ctggtcaaggtcatccgcgacctgttcaacgaggacttctccgggctgatcgtatccggc
gacgacgcgtggaacaccatcaacgagtacgtgaattccgttgcgcccgaacttcttccg
aggctgacgaagtacgagacggccgaagacggtccggatgtgttcgcagtgcaccgcatc
gacgagcagttgaccaaggcgatggaccgcaaggtgtggctaccctcgggcggcacgctg
gtgatcgaccgcaccgaggcgatgacggtcgtcgacgtgaacaccggcaagttcaccggt
tcgggcggcaacctggagcagacggtcacccgcaacaacctcgaggcggccgaggagatc
gtgcgccagctacggctgcgcgacatcggcggcatcgtcgtcatcgacttcatcgacatg
gtcctggaatccaaccgggatctggtgctgcgcaggctgaccgagtcgctggcccgcgac
cgcacgcgccatcaggtctccgaggtgacgtcgctgggactggtgcagttgacgcgaaag
cggttgggcaccgggctgattgaggcgttctcgacgccatgcccgcactgcgcgggccgg
gggatcatgctccacggcgatccggtggattccgtctcggccggcagccgcaagtcggac
accggtgggcgtcgcggcaagcgaggcaagaagggcgccaaggccgacgacgtcccggtc
gcgaaggttcccgcgcatcccgccggtgagcatccgatgttcaaggcgatggccgcggcc
aacggtaagcatgagcacggcgatgaagacaccgacggcgaggtcgacgagaccaaggcc
gccaaggaagtcgccgagctcgagcccgacaccatccgcgaggcctatgtcgaggccgag
gacgaagagctcgaggacgaagacttcgacgagtctgatgaggacgagtcggatgaggac
gagtctgatgaagacgagtcggacgaagacgagtccgatgaggacgagatcgacctcgac
gccgacgacgaggatgacgacatcgatgacgacatcgaggtcatcaacggcgacaccgat
gacgacacagagtcggacgacgacgagtatgacgacgatgacaccgatgaggacgacgac
tccgacgacgactcggatgacgagcactcggatgacgacgagtctgacgaggacgactcc
gacgaggacgacgacaacgtccaccagcccgccgcggtgagcgctgcgggcggtcgtcat
cgccggcgcgccgccatgcggcccgctggtccgccgacccacgacggctga
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