Mycobacterium shinjukuense: MSHI_07700
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Entry
MSHI_07700 CDS
T07415
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mshj
Mycobacterium shinjukuense
Pathway
mshj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mshj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSHI_07700 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mshj03019
]
MSHI_07700 (rne)
03009 Ribosome biogenesis [BR:
mshj03009
]
MSHI_07700 (rne)
Enzymes [BR:
mshj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MSHI_07700 (rne)
Messenger RNA biogenesis [BR:
mshj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MSHI_07700 (rne)
Ribosome biogenesis [BR:
mshj03009
]
Prokaryotic type
rRNA processing factors
MSHI_07700 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
BBX72864
UniProt:
A0A7I7MKN1
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All DBs
Position
880272..883130
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AA seq
952 aa
AA seq
DB search
MGTTSQRVLDALTSLDGRIRSAHSTVDHVDAVRVRDLLAAQAPDAPATTGVPGATDAPPA
PDLPTPGEPESRLMLQTPETPPGPQTDVERPHYMPLFVAPQPIELDDDAGDDYADDTDDA
DGYGPEDDDEQTGRPASRRRRRGRRGRGRGRGEQNGSDGPADGRAGDDANGPADREAEQW
AQPGAPNVEATGSEDIAGPAAEDADDTETGEADNGSPEAGTRRRRRRRRRKSGAGEDSDE
GPAPDDPPNTVVHERAPRAGAKPGSDVADDDGAAEIKGIDGSTRLEAKRQRRRDGRDAGR
RRPPVLTEAEFLARREAVERVMVVRDRVRTEPPHAGARYTQIAVLEDGIVVEHYVTSAAS
ASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGADRRIEQALTPG
DYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKEILREV
VPSDAGVIIRTASEGVKEEDIRADVARLQERWNQIQAKATEIKEKAAGAAVALYEEPGVL
VKVIRDLFNEDFSGLIVSGEEAWTTINDYVNSVAPELIPKLTKYEAAAGPDGQSGPDVFA
VHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEQTVTKNNLEA
AEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQ
VTRKRLGTGLIEAFSTSCPNCGGRGILLHADPVDAAATGRKPESGGRRGRRSKKSRSEEP
TVAKVPAHTPGEHPLFKAMAAGLSAAAERGDGESGEPGAELAAEIDEQTEDQVPADFEDT
DFADTEDTDEVDVELVDDVDLDDDELDEDLVDDDEDLDDDLDVSDEEADEDIDEDTEDDP
EDDSDGGGAGADVGDGTGVPVTPAAPIQVVSTVGRPRRRAAGRPAGPPIHLD
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaccaccagccagcgggtgctggacgcgttgacctcgctcgacggacggatccgc
agcgctcattccaccgtggatcacgtcgatgcggttcgggtgcgcgatctgctggctgcc
caagccccggacgcacccgccaccacgggtgtgccgggcgccaccgatgcgccaccggcc
cccgacctccccacgcccggcgaacccgaatccaggctgatgctgcagaccccggagacc
ccgccgggcccgcagacggatgtcgagcggccgcactacatgccgctgtttgtcgcgccg
caacccatcgagctcgacgacgacgcgggcgatgactatgccgacgacaccgacgacgcc
gatggctacggcccggaggacgacgacgagcaaaccggacggcccgcgagccggcgccgc
cgtcgtggccggcgcggacgtggtcgcggacgcggggagcagaacggatccgacggccca
gcagacggccgcgccggcgacgacgccaatggcccggccgatcgggaagccgagcaatgg
gcccagccgggcgccccaaacgtggaggccaccggctccgaggacatcgccggcccagcg
gccgaggacgccgacgacaccgagaccggcgaggcggacaacggttcgccggaggccggc
acccgtcgccggcgccgccgacggcggcgcaagtcgggtgcgggtgaggatagcgacgag
ggtccagcacccgacgatccgcccaacaccgtcgtgcacgaacgtgcgccgcgcgcgggg
gccaagcccggctcggatgtcgccgacgacgacggtgccgccgagatcaagggcatcgac
ggctcgactcggctggaggccaagcgtcagcgccgccgcgacgggcgggacgcgggacgg
cgccgcccgccggtgttgaccgaggccgaattcttggctcgccgcgaggctgtcgagcgg
gtcatggtcgtccgcgaccgggtgcgcaccgagccgccgcacgcgggcgcccggtacacc
cagatcgcggtgctcgaagacggcatcgtggtggagcattacgtcacgtctgcggcctct
gcctcgctggtgggcaacatctacctggggatcgtgcagaacgtgctgccctcgatggag
gcggccttcgtcgacatcggtcgtggccgcaacggcgtgctctacgccggcgaagtcaac
tgggaggccgccgggttgggcggggccgaccgcaggatcgaacaggccctcacacctggc
gactacgtggtggtgcaggtcagcaaggatccggtcgggcacaagggcgcgcggctgacc
acccaggtgtcgctggccggccgttacctcgtttacgtgcccggtgcctcgtcgacgggg
atcagccgcaagctgcccgacaccgaacgtcagcggctcaaggagatcctgcgcgaggtg
gtgccgtccgacgcgggcgtgatcatccgtaccgcgtccgagggggtcaaagaggaggac
atccgcgcggacgtcgcccgactgcaggagcgctggaatcagatccaggccaaggcaacc
gagatcaaggagaaggccgccggtgccgccgtcgcgctctacgaggaaccgggcgtgctg
gtcaaggtgattcgtgacttgttcaacgaggatttctccgggctcatcgtctccggagag
gaagcctggacaacgatcaacgattacgtgaattcagttgcgcccgaattaattccgaag
ctgaccaagtacgaagccgctgccgggccggacgggcagtccggcccggacgtgttcgcg
gtgcatcgcatcgacgagcagttggccaaggcgatggaccgcaaggtgtggctgccgtcg
ggcggcacgttggtgatcgaccggaccgaagcgatgacggtgatcgacgtcaacaccggc
aagttcaccggttcggggggaaacctcgagcagactgtcaccaagaacaacctcgaagcc
gccgaggagatcgtgcgccagctgcggctgcgcgatatcggcggcattgtggtcatcgac
ttcatcgacatggtgctggaatccaaccgcgacctggtgttgcgtcgactgaccgaggcg
ctggcccgcgaccgcacccgccatcaggtgtcagaggtgacgtcgctgggcctggtgcag
gtgacccgcaagcggctgggaaccgggttgatcgaggcgttttccacctcgtgtcctaac
tgcgggggccgcgggatcctgttgcacgccgacccggtcgatgcggcggcgaccggacgc
aagcctgagtccggcggtcggcggggcaggcgatcgaagaagagccgatccgaggagccc
acggtggccaaggtccccgcgcacacgccgggtgagcatccgttgttcaaggcgatggcc
gcgggcttgtccgcggcggccgaacgcggtgacggcgaatcgggagagcccggcgcggag
ctcgccgccgagatcgacgagcagaccgaagaccaagtgccggccgacttcgaagacacc
gacttcgcggacaccgaagacaccgacgaagtcgacgtggagctcgtcgacgatgtggac
ctcgacgacgacgagctcgacgaggacctcgttgacgacgatgaggacctcgacgacgat
ctggacgtgtccgacgaggaagccgacgaggacattgacgaggacaccgaggacgacccc
gaggacgactccgacggcgggggggcaggcgccgacgtgggggacggcaccggcgtcccg
gtcaccccagccgccccgattcaggtcgtgtcgaccgtcgggcgaccgcggcggcgcgcg
gccggtcggccggccggcccgccgatccacctggactga
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