Marinobacter salinus: BKP64_03320
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Entry
BKP64_03320 CDS
T04766
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
msq
Marinobacter salinus
Pathway
msq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKP64_03320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msq03019
]
BKP64_03320
03009 Ribosome biogenesis [BR:
msq03009
]
BKP64_03320
Enzymes [BR:
msq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BKP64_03320
Messenger RNA biogenesis [BR:
msq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BKP64_03320
Ribosome biogenesis [BR:
msq03009
]
Prokaryotic type
rRNA processing factors
BKP64_03320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AOY87292
UniProt:
A0A1D9GI27
LinkDB
All DBs
Position
complement(708153..711239)
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGRITRVEPSLEAAFVDF
GAERHGFLPLKEISKEYFKKSPGQIDGKVNIKDVVSEGQEVIIQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKEAMNDVQVPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYED
VLNFVRAVMPTFENKIKLYRDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLADIEARQEVSVVVVPVPHMET
PHFEILRMREDETTPEHISSHQVAQEYSEREEEVLETPTAERPAREQAAVKAIRPSAPAP
TPAAKPAQESEQEEGLFRRLGRKISDFFGGDEEQPSEARDKSKAAREDRRTQDRQDRRKS
RVARDDQRSGTGNRSGNDRRRGSQQSRGDDNRGRNRTDDQNRSSQNRPTTDKSAENKGGD
SKGGDSKGGQGRSRGQGRSKPQREQKEVREQKDQQDTAKKPASSEKSAGAGAVEEKRRKP
RRQRGRDGSPTEAPSSTPADRKAARSDIHQKDTQPEQPLDAGTPEVKAADEQQNSRGKQA
SPEKPQNGKQPQTSEAPVAPKTEKPEQPKAPQETPPQEEPKQAKPTAKSESPKASPKADE
SPEPKGAEKAEAKAEAKVDKATTAEVSENKPKPAKPEAKAEAKADRKPAAKAERPSEPAK
DQEQETTQPAEKVAETTAEAEKVETNAGNEARPEAKASQPEAQEQKAPEQEKPKAETPEP
KPAAAPATDTHLESERAAKPVSMDSDQAKPEEQPGVDVPVTPGRAYNDPREVRKRQRAAE
AAKKAGSN
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaatgcaactcatcctgaagagttgcgcgtcgctttggtcgac
ggccagcgtctgttcgaccttgatatcgaatccagctcacgcgagcagaaaaaagccaat
atttacaaaggccgcatcactcgagtcgagcccagccttgaggcagcttttgtcgatttc
ggtgccgagcgccacggcttcctgcccctgaaggaaatctcaaaggaatacttcaagaaa
tcacccggccagatcgacggcaaggtcaacatcaaggatgtggtctccgaaggccaggaa
gtcattatccaggtcgataaagaagagcgtggcaacaagggcgcagccttgaccacgttt
atctcccttgccgggcgctatttggtgctgatgcccaacaacccccgggcgggcggaatt
tcacgccgtattgagggcgatgagcgagcccagcttaaagaagccatgaacgacgtccag
gtgcccaagtctatgggcatcatcgtacgaaccgccggcatcgggcgcaccacggaagag
ctccagtgggacctcgactatctggtgcaattctgggaagccattacccaggctgccggc
gaacgcaaagcgccgtttctgattcaccaggaaagcaacgtcatcattcgggcggtacgg
gattacctccgccaggacattggcgaggtgttgatcgacgctaacggcgtatacgaggac
gtgctgaactttgtgcgggccgtaatgccgaccttcgagaacaagatcaagctgtaccgg
gatgaaatccccctgttcagccgctaccagattgaaggccagatcgagaccgcattccag
cgggaagtgaagctgccgtcgggcggctcgatcgtcattgacccgaccgaagccctggta
tctatcgacatcaactcttctcgtgccaccaaaggtcacgatattgaagaaacagcgctt
cagaccaacctggaagcagccgaagaaatagcgcgccaactgcgtctgcgcgacatgggc
ggcctgatcgtaatcgacttcatcgatatgaccccggccaaacaccagcgcgaagtcgag
cagaaaatgcgcgaagctctggaaatcgatcgcgccagggttcaggtaggcaaaatctcc
cgtttcggactgctggaaatgtcacgccagcgtctgcgcccctctcttggggaaacgcgc
agtgaagtatgcccccgttgcgagggccagggtacgattcggggtatcgaatcgctggca
ctgagcatcatgcgcctgatctatgaggagtcctcaaaggacaagactggcgaggtccgt
gccgtggttccggtatcagtagccaccttcctgctaaacgaaaaacgcaagcagctggcc
gatattgaagctcgccaggaagtcagcgttgttgtggtcccggttccgcacatggagacg
ccgcacttcgaaatcctgcgcatgcgcgaagacgagaccacgccggagcacatttccagc
catcaggtggcccaggaatacagcgaacgcgaagaagaagttcttgaaacaccaacggct
gagcgccctgcccgcgaacaggctgccgtaaaagcaattcgcccgagcgcaccagccccg
acacctgcggcaaaaccggctcaggaatccgagcaggaagaagggctcttccgacgcctg
ggccggaagatttccgactttttcggcggtgatgaagagcagccttcagaagcgcgagac
aaaagcaaagccgcgcgtgaagaccgccgcacccaagaccgccaggaccgccgcaagtcc
cgtgtagcgcgtgatgaccagcgttccggcaccggcaaccggagtggcaatgatcgtcgc
aggggtagccaacagagccgcggcgacgacaatcgcggacgtaaccgtaccgacgaccag
aaccgcagcagccagaaccgcccgactaccgataagagtgccgagaacaaaggcggtgac
agtaaaggtggcgacagcaagggtggccagggccgcagtcggggtcaaggtcgcagtaaa
cctcagcgcgaacaaaaagaggttcgcgagcagaaagatcagcaggatactgcgaaaaag
ccagccagcagtgaaaagagtgcgggcgcgggtgcggttgaagaaaaacgccgcaagcca
cgccgccagcgtggccgggacggctctccgacggaagcaccctcttccactccggcagac
cgcaaggctgcgcgcagcgacatacaccagaaagatacccagccagagcaaccgctggac
gctggcacaccagaggttaaggcggcagacgagcagcagaacagccgtggcaaacaggct
tcgcctgagaagcctcaaaatggcaagcagccacaaacgtcagaggccccagtagctccg
aaaacagaaaaaccggaacagcccaaggcgccgcaggaaactcccccccaggaggagccg
aagcaggccaagccgaccgcaaaatcggagagccccaaggcctcgcccaaggcggacgaa
tcgccagagccgaagggtgccgaaaaggcggaggcgaaggcagaagccaaagtcgacaaa
gcgacgactgcggaagtatcagagaataagcctaagccggcgaaacccgaagccaaagcg
gaagccaaagccgaccggaaaccggctgccaaggcagagcgccccagcgagcctgccaag
gaccaggagcaggaaactacccagccagccgagaaggttgcagaaaccacggctgaagcg
gaaaaggtggaaaccaacgccggaaacgaggcgaggccggaggccaaagcatcccaacct
gaggctcaggagcaaaaggcaccagaacaggaaaagcccaaagccgagactccggaaccg
aaacctgccgccgcaccggcaaccgacacccatctcgaaagcgagagggcggcaaaaccg
gtcagcatggattcggatcaggccaagcctgaagagcagccaggagtcgacgtcccggta
acacccggccgcgcctacaacgatcccagagaagtccgtaagcgccaacgcgctgcggaa
gcggccaagaaagccgggagtaactga
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