Microcaecilia unicolor: 115478192
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Entry
115478192 CDS
T09142
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
muo
Microcaecilia unicolor
Brite
KEGG Orthology (KO) [BR:
muo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
muo03016
]
115478192 (RTCB)
Enzymes [BR:
muo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
115478192 (RTCB)
Transfer RNA biogenesis [BR:
muo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115478192 (RTCB)
Prokaryotic type
tRNA splicing ligases
115478192 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
115478192
NCBI-ProteinID:
XP_030071339
UniProt:
A0A6P7Z6I6
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All DBs
Position
9:3640894..3662839
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLEKITRNSWRIKKAFVPNMQVEGVFYVNDALEKLMFEELRNSCRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNSEAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
DEGQDYLKGMAGAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKEKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctccagtatctggagaaaatcacccggaactcttgg
cgcattaagaaggccttcgtgcccaacatgcaggtggaaggggtgttttatgtgaatgat
gctctggagaagctgatgtttgaagaacttcgcaattcttgtcgtgggggtggtgccgga
ggcttcctgcctgccatgaagcagatcggcaatgttgctgccctgccgggaattgttcat
agatccatagggcttcctgatgtgcattctggttatggctttgccattggcaatatggct
gcctttgacatggataattcggaagcagtagtgtcgccaggtggcgtcgggtttgatatc
aactgcggagtgcggctcttgcgcacaaacctcgatgagggtgacgtgcagcctgtgaag
gaacagctggctcaggccatgtttgaccacatccctgtcggtgtgggatccaagggggtt
atccccatgaatgctaaggacctggaggaggccctggaaatgggtgtggactggtctctg
cgggagggctacgcctgggcagaggataaggagcattgtgaggaatatggtcgaatgcta
caggctgatcccagtaaggtctcttccaaggccaagaagcggggtttgcctcagctggga
actctgggagcaggaaaccattacgctgagattcaggtggtggatgaaatttataacgag
tatgcggccaagaaaatgggcatcgaccacaaggggcaggtgtgcgtgatgatccacagt
ggcagccgtggcctgggccaccaagttgctacagatgccttggtggctatggaaaaagcc
atgaagagggacaagatcatagtgaatgacagacagctagcgtgtgccaggatctcctca
gacgagggacaggactacctaaagggcatggcaggagctggcaactatgcgtgggtcaac
cgctcttccatgaccttcctcactagacaggcttttgcaaaagtcttcaacaccacccca
gatgacctggatttgcatgtgatctacgatgtgtctcacaacatcgctaaggtggagcag
catgtggtggatgggaaggagaagacactgctagtgcacaggaaaggatctacgcgagcc
ttcccaccccaccatccactcattgctgtggattaccagctaacaggacagcccgttctg
atcggtggaaccatgggaacatgtagctacgtcttgacggggactgagcaaggcatgacc
gagacatttggaacaacttgccatggagctggacgtgctctatccagagccaagtctcgc
cgtaacttggacttccaggatgtgttagacaaactggcagacatgggcatagccatccga
gtggcatcaccaaagctggtcatggaagaggcaccagagtcgtacaagaatgtgacagat
gtggtaaacacatgccatgacgctggcatcagcaagaaagccatcaaactccgaccaatt
gcagtcatcaagggctag
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