Oecophyllibacter saccharovorans: E3E11_06795
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Entry
E3E11_06795 CDS
T06092
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
neh
Oecophyllibacter saccharovorans
Pathway
neh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
neh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3E11_06795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
neh03019
]
E3E11_06795
03009 Ribosome biogenesis [BR:
neh03009
]
E3E11_06795
Enzymes [BR:
neh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E3E11_06795
Messenger RNA biogenesis [BR:
neh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3E11_06795
Ribosome biogenesis [BR:
neh03009
]
Prokaryotic type
rRNA processing factors
E3E11_06795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QDH15610
LinkDB
All DBs
Position
complement(1564202..1567162)
Genome browser
AA seq
986 aa
AA seq
DB search
MTKHMLIDATHDEETRVVVMNGRRIEEYDIETSARRQLKGNIYLAKVIRIEPSLQAAFVE
YGGNRHGFLPFSEIHPDYFQIPIADRAKLLELQEEEYAAEQQALEAGDGESPGPERASRG
DRNDRDDERPETVSGENDTGEDNTAARRTARFLRNYQIQEVIRRRQILLVQVTKEERGNK
GAALSTYISLPGRYCVLMPNALRGGGVSRKITSESDRRRLRDIITGLNLPPSMAMIVRTA
GGGRPGPEVTRDCDYLLQLWDDIRSRALTAIAPALVYEEANIIKRAIRDLYTRDIDDIIV
DSEEAWENTREFTRQLMPHNTNKVKLWQNRGQSLFARYNVENHLEAMVAPTVQLESGGYI
VINQTEALVAIDVNSGKSTSQRNIEETALRTNLEAAEEIARQLRLRDLAGLVVIDFIDME
SRKHNGQVEKRLKEALRHDRARIQVGKISHFGLLEMSRQRLRPSLAETMLSPCPQCHGTG
QVRGTESAVLHVLRAIEETGAAAKHPAAITVLVAPEIALYILNSKRDSLAEIEERCGMKI
TFEADKSLSGMDFKIVPDEEAGQVTNVRSQNPGYGQGYGRGAEHKHNGRERREGNGPVHQ
GPQPRIIDIEEADAPFIGREGEEEIVIPGRRGSRGGAGNAHSAGEASAVDNGTAENGDGG
RRSKRRRNRRERPAREGAEREAVAPGLGVQSAPEAVAEPESRAQNQGQGNTRRRERPDSQ
ERAPREAAPKAQPQRNRRRQAAPEEEITVPRSAAPAPEPHASESEAQLMPGRKRTRLRRR
ADEEAPQAHAARETREAPAYRGPTPADPFGSGVYDIHDVFDTADASPVRRGEPAPVHETR
VAEEPTPEPVKTPAPKTPARRTRTRRKAAAEVQPEAQPETIAEVAEAPQVHAPAAETSPV
EEAPRKRQRTRKAAPKVEAEAETGTEAPAPKAPRARGSSARAGAAKTGPAKTGAEKAATG
ENQAAPKPIDVDEVQPAKRRAGWWSR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacacatgctcattgacgccacccatgacgaggaaacacgcgtggtggtgatg
aatggccgccgcattgaggaatatgacatcgagacctcggcgcgtcgccagctcaagggc
aatatctaccttgccaaggtgatccgcatcgagcccagcctgcaggcggcctttgtggaa
tatggcggcaaccgccacggcttcctgcccttcagcgagatccaccccgattacttccag
atccccattgcagaccgcgccaagctgctcgagctgcaggaggaggaatatgccgccgag
cagcaggcgcttgaagcgggcgatggtgaaagccccggccctgagcgtgcttcacgtggt
gaccgtaatgaccgtgacgacgagcggcccgagacggtcagcggcgagaacgataccggc
gaggacaacaccgctgcgcgccgcaccgcgcgtttcctgcgcaactaccagatccaggag
gtgatccgccgccgccagatcctgctggtgcaggtcaccaaggaggagcgcggcaacaag
ggtgcagcgttgagcacctatatctccctgcccggccgctactgcgtgctgatgcccaac
gccctgcgcggcggcggggtgtcgcgcaagatcacctccgagtccgaccgcaggcggctg
cgcgacatcatcaccgggctcaacctgccgccttccatggcgatgatcgtgcgcaccgca
ggcggcgggcggccgggacccgaggtcacgcgcgactgcgactacctgctgcagttgtgg
gatgacatccgctcccgcgcgctgacggccatcgcccccgcgctggtctatgaagaggcc
aacatcatcaagcgcgccatccgcgacctctacacccgcgacattgacgacatcatcgtc
gacagcgaggaagcgtgggagaacacgcgcgagttcacccgccagctcatgccccacaac
accaacaaggtgaagctgtggcagaaccgcgggcagagcctgtttgcgcgctacaatgtg
gaaaaccacctcgaagccatggtggcgcccaccgtgcagctggaatcaggcggctacatc
gtcatcaaccagaccgaggcgctggtggccattgacgtcaattccggcaagtccacctcg
cagcgcaacattgaagagacggcattgcgcaccaacctcgaggccgccgaggagatcgcc
cgccagctgcgcctgcgcgacctggccggcctggtggtgatcgacttcatcgacatggag
agccgcaagcataacggccaggtggaaaagcgcctcaaggaagcgctgcgccatgaccgt
gcgcgcatccaggtgggcaagatctcgcatttcggcctgctggagatgtcgcgccagcgc
ctgcgcccctccctggccgaaacgatgctcagcccctgcccccagtgccacggcacgggc
caggtgcgcggcactgaaagtgcggtgctgcacgtgctgcgcgccatcgaggagaccggg
gctgctgccaagcaccccgcagccatcaccgtgctggtggcccctgagatcgcgctctac
atcctcaacagcaagcgcgacagccttgccgagatcgaggagcgctgcggcatgaagatc
acctttgaggccgacaagtcgctttcgggcatggacttcaagatcgtgccagacgaagag
gcgggccaggtcaccaatgtgcgcagccagaacccgggttacggccagggttacggccgg
ggcgcggaacataaacataatggccgtgagcgccgcgaaggaaacggcccggtccatcag
gggccgcagccgcgcatcatcgacatcgaggaagcggacgcgccgttcatcgggcgcgag
ggcgaggaagagatcgtcatccccggccgccgtggcagccgcgggggtgcgggtaatgct
cacagtgcgggtgaggccagtgcggttgataacgggacggctgagaacggtgatgggggc
cgtcgctccaagcgccgccgcaaccgccgggaacgcccggcgcgtgaaggcgctgagcgg
gaggcggttgccccgggtctgggcgtgcagagcgcgcctgaggccgtagcggagccggaa
agccgggcccagaatcagggccagggcaatacccggcgcagggagcggccggattcccag
gaacgcgcgccccgggaagccgcgcccaaggcgcagcctcagcgcaaccgccgccggcag
gctgctcctgaagaggagatcacggtgccgcgctctgctgcgcccgcacctgagccccac
gcatctgaaagcgaggcccagctcatgcccggccgcaagcgcacccgcctgcgccgccgc
gctgacgaggaggccccgcaggcgcacgctgctcgcgagacccgtgaggcccctgcctac
cgcggccccacaccggctgatcccttcggcagcggggtgtatgacatccatgacgtgttc
gacaccgctgacgcctcccccgtgcgccgcggggaaccggccccggtgcatgaaacgcgc
gtggctgaagaacctacgcccgagccggtgaagacgcccgcccccaagaccccggcgcgc
cgcacgcgcacccgccgcaaggccgcggctgaagttcaacctgaagcccagcctgaaacg
attgcggaggtggctgaagcgccgcaggtccacgcgccggcagcggaaacgagcccggtc
gaggaagctccgcgcaagcgccagcggacccgcaaggcggcccctaaggtggaggctgaa
gctgagaccgggactgaagcgcctgcgcccaaggccccccgcgcccgcggcagctctgcc
agggctggggcggcaaaaactggcccggcaaagaccggagctgaaaaagccgcgaccggt
gagaaccaggccgcgcccaagcccatcgatgtcgatgaggtgcagcctgccaagcgccgt
gcgggctggtggagccgctga
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