Nocardiopsis exhalans: NE857_25455
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Entry
NE857_25455 CDS
T08285
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nex
Nocardiopsis exhalans
Pathway
nex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE857_25455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nex03019
]
NE857_25455
03009 Ribosome biogenesis [BR:
nex03009
]
NE857_25455
Enzymes [BR:
nex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NE857_25455
Messenger RNA biogenesis [BR:
nex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NE857_25455
Ribosome biogenesis [BR:
nex03009
]
Prokaryotic type
rRNA processing factors
NE857_25455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
USY18612
LinkDB
All DBs
Position
complement(5753511..5756753)
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AA seq
1080 aa
AA seq
DB search
MLDNEPKNGADGTAGTTETTENKAATPPSGDGAVRVTTPAPAKGARRAAGPPPEPDDVFS
PPAMPVTTLAGSGEGGTVKTSVSTSSSRKRTVRAAGRPDDAPAAAPRRTRTRAAAQDKGG
AADTAQVTEPAGSDGSAEAREDTRTQGGAKDNDKDSGRSRTRGRTRGRSGRTADRAAEAP
APQVQDDPEEAEETPAEISGGAVFQPPGGMLFQPPVASAPAQTKPKKEKVVEAEPEPEED
TEEESAESPAEETGSDERPSRRRRRRGGRGRGRSRTGEDQDNEDAQGDSAPAESTAKQRE
RDDRADAEENGTEEASGEDSEDGEDGERGSSSRRRRRRRRRSASGGESTNDDPPNTVVKV
REPRQERPIENEVQAVRGSTRLEAKKQRRREGREQGRRRAPIVTESEFLARREAVKRDLV
VRRIGDRTQIAVLEDDILVEHYVDRATHRSYVGNVYLGRVQNVLPSMEAAFVDIGKGRNA
VLYAGEVNWDSFGLDGQPKRIESVLKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVY
VPGGSMTGISRKLPDKERARLKTILKKVMPSGAGVIVRTAAEGASEEELERDINRLAKQW
ESIKRKSKSANAPSLLNSEPDLTVRVVRDVFNEDFSSLVVAGEEAWTTVHEYVDYVAPNL
AERLSHWDEDRDVFSEYRIDEQINKALERKVYLPSGGSLIIDRTEAMTVVDVNTGKFTGQ
GGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDR
TKHQVAEVTSLGLVQMTRKRVGQGLLEAFSHTCDHCNGRGLLVSSDPVENKGGGGGGTGR
KKKKGKGEADGASDKAEKQDGDDRPAQAEESAEQPDTKADKTDKGGEKPEKADKPEKATK
RSRGRKAAEPVAEAEQAGSSPDAVVEEGSAAVTELAPDVEAPEAEQSVPAKKTRKRSSRA
KKAVEPVETAAAAETAAQEPAAEQGEQTPEQPEAPAAEEAPAKRTRRRTSTRKAAAAADG
GEGEQAQASGTEQASDADAAETPADGDAEGATERPKRRRTRRTKTAVTSPTGGSTAVDAG
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagcccaagaacggtgccgacggcaccgcgggtacaactgaaacaacc
gagaacaaggcggcgacgcccccttcgggggacggcgcggttcgggtgaccacgcccgcg
ccggccaagggcgctcgccgcgcggcaggaccaccccccgaacccgacgacgtcttctct
ccgcccgccatgccggtcaccaccctggccggctccggtgagggcggcacggtcaagacc
tcggtgagtacgtccagctcgcgcaagcgcaccgtgcgcgccgcgggccgaccggacgac
gcgcccgccgccgcgccgcgccgtacgcgtacccgggcggcggcccaggacaagggcggc
gccgccgacaccgcgcaggtcaccgagcccgctggctccgatggctccgccgaggcccgg
gaggacacccggacccagggcggcgccaaggacaacgacaaggactccggcaggagccgg
acccgcggcaggacgcgtggccgttcgggccggaccgcggaccgggccgccgaggcgccc
gccccgcaggtccaggacgacccggaggaggccgaggagaccccggccgagatctccggc
ggcgccgtcttccagccgcccggcggcatgctcttccagcccccggtcgccagcgctccc
gcccagaccaagcccaagaaggaaaaggtcgtcgaggcggagcccgagcccgaggaggac
accgaggaggagtccgccgagagcccggccgaggagaccggttcggacgagcgccccagc
cgtcgccgtcgtcgccgcggcggccgcggccgcggccgctcgcgcaccggcgaggaccag
gacaacgaggacgcccagggcgactccgcgcccgccgagagcaccgctaagcagcgcgag
agggacgaccgcgccgacgccgaggagaacgggaccgaggaggcctcgggtgaggactcc
gaggacggtgaggacggcgagcgcggcagcagcagccgtcgccgtcggcgccgccgtcgg
cggtcggcctccggcggcgagtccaccaacgacgacccgccgaacaccgtggtcaaggtg
cgcgagccgcgccaggaacggcccatcgagaacgaggtccaggcggtccgcggttccacc
cgcctggaggccaagaagcagcgccgccgcgagggtcgcgagcagggccgccgccgcgcg
cccatcgtcaccgagtccgagttcctggcccgccgcgaggcggtcaagcgtgacctggtc
gtgcgccggatcggcgaccgcacccagatcgccgtcctcgaggacgacatcctcgtcgag
cactacgtggaccgggccacgcaccgctcctacgtgggcaacgtgtacctgggccgggtg
cagaacgtgctgccgtcgatggaggccgccttcgtcgacatcggcaagggccgcaacgcc
gtgctgtacgcgggcgaggtcaactgggactcgttcggcctggacggccagcccaagcgc
atcgagtcggtgctcaagtcgggccagtcggtcctggtgcaggtcaccaaggacccggtc
ggtcacaagggtgcccgtctgaccagccagatcagcctgcccggccgctacctggtgtac
gtgcccggcgggtcgatgaccggtatcagccgcaagctcccggacaaggagcgcgcgcgc
ctcaagaccatcctcaagaaggtgatgccctccggcgccggtgtgatcgtgcgtacggcc
gccgagggtgccagcgaggaggagctcgagcgcgacatcaaccgtctcgccaagcagtgg
gagtcgatcaagcgcaagtccaagtcggccaacgccccgtccctgctcaacagcgagccg
gacctgacggtgcgcgtggtgcgcgacgtgttcaacgaggacttctccagcctggtcgtc
gccggtgaagaggcctggaccaccgtccacgagtacgtggactacgtggcgcccaacctc
gccgagcgcctgtcgcactgggacgaggaccgcgacgtcttctccgagtaccggatcgac
gagcagatcaacaaggccctcgagcgcaaggtgtacctgcccagcggcggttcgctgatc
atcgaccgcaccgaggccatgaccgtggtcgacgtcaacaccggcaagttcaccggtcag
ggcggaaacctcgaggagacggtcaccaagaacaacctcgaggcggccgaggagatcgtc
cgccagctccgcctgcgcgacatcggcggcatcatcgtcatcgacttcatcgacatggtg
ctggagtccaaccgcgacctggtgctgcgtcggatgctggagtgcctgtcccgggaccgg
accaagcaccaggtggccgaggtcacctcgctcggtctggtgcagatgacccgtaagcgg
gtcggccaggggctgctcgaggccttctcccacacctgtgaccactgcaacggtcgcggc
ctgctggtctccagcgacccggtggagaacaagggcggcggcggtggcggcaccggtcgc
aagaagaagaagggcaagggcgaggctgacggagcctccgacaaggcagagaagcaggac
ggcgacgaccgtcccgcgcaagccgaggagagcgccgagcagcccgacacgaaggcggac
aagaccgacaagggcggcgagaagccggagaaggccgacaagcccgagaaggccaccaag
cgcagtcgtggccgtaaggccgctgaaccggtggccgaggccgagcaggctggttcttcc
ccggacgctgtggttgaggaaggctcggccgctgtgaccgagctcgcaccggacgtcgag
gcccccgaggccgagcagtccgtcccggcgaagaagacgcgtaagcgttcctcccgcgcc
aagaaggccgtcgagcccgtggagaccgcggcagcggccgagacggccgcgcaggagccc
gccgcggagcagggtgagcagaccccggagcagcccgaggcccccgcggccgaggaggcc
ccggccaagaggacccgcaggcgcaccagcacccgcaaggcggccgcggccgccgacggc
ggtgagggtgagcaggcgcaggcgagcggcaccgagcaggcctcggacgccgacgccgcc
gagacacccgccgacggggacgcggagggcgccaccgagcgtcccaagcgtcgccgtaca
cggcggaccaagacggcggtgacctcaccgaccggtgggtccaccgcggtcgacgccggc
tga
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