Nissabacter sp. SGAir0207: C1N62_14870
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Entry
C1N62_14870 CDS
T09781
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nig
Nissabacter sp. SGAir0207
Brite
KEGG Orthology (KO) [BR:
nig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nig03016
]
C1N62_14870
Enzymes [BR:
nig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C1N62_14870
Transfer RNA biogenesis [BR:
nig03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C1N62_14870
Prokaryotic type
tRNA splicing ligases
C1N62_14870
BRITE hierarchy
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QCR37269
UniProt:
A0A4P8SL14
LinkDB
All DBs
Position
complement(3343652..3344872)
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AA seq
406 aa
AA seq
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MPDYQLLSAAHAAPIKMWTHGVPVEAEARDQLMNTAKMPFIFKHLAVMPDVHLGKGSTIG
SVIPTRGAIIPAAVGVDIGCGMIAVRTSLMASDLPDNLSGLRSAIERAVPHGRTVGRGKR
DQGSWDRTPQEVDAHWAALATRFKRLTDKYPQLLKTNNHQHLGTLGTGNHFIEICLDEQQ
RVWVMLHSGSRGVGNAIGTLFIALAQKDMQRHLANLPDRDLAYFQEGSRHYDDYLEAVGW
AQDFARHNREVMMSRVLAALSQTVPKPFLTQQEAVNCHHNYVQQERHFGEQVLVTRKGAV
SARKGEMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRAAAKKRFTVQDQIRATA
HVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgcctgactaccagctgctaagcgccgcccacgccgcgccgatcaaaatgtggacccac
ggcgtgccggtggaggcagaggcgcgcgaccagttgatgaacaccgccaagatgccgttt
atcttcaagcacctggcggtgatgccggatgtgcatttggggaagggatcgaccatcggc
agcgtgatcccgacgcgcggcgcgatcatcccggcggcggtgggcgtggacattggctgt
ggcatgatcgcggtgcgcacctcgctgatggccagcgacctgccggataacctcagcggc
ctgcgtagcgccatcgagcgcgccgtgccgcacgggcgcaccgtgggccgtggcaagcgc
gatcaggggtcatgggatcgcacgccgcaggaggtggacgcccactgggcggcgctggca
acccgcttcaagcgcctcaccgacaagtacccgcagctactaaaaaccaacaaccaccag
cacctcggcacgctcggcaccggcaaccacttcatcgagatctgtctggatgagcagcag
cgcgtctgggtgatgctgcacagcggatcgcgcggcgtcggcaacgccatcggcacgctg
ttcatcgcgctggcgcagaaggatatgcagcgccacctcgccaacttgccggatcgcgat
ctggcctattttcaggaggggagccgccactacgatgactacctggaagcggtggggtgg
gcacaggattttgcgcgccacaaccgcgaagtgatgatgtccagggtgctggcggcgctc
tcgcagacggtgccgaaacccttcctcacccagcaggaggcggtcaactgtcaccacaac
tatgtgcagcaggagcggcacttcggcgagcaggtgctggtcacccgcaagggcgcggtc
tcggcaaggaagggcgagatgggcatcatccccggttcaatgggcgcaaagagctttatc
gtgcgcgggctgggcaatgaagagagcttctgctcctgtagccacggcgcaggccgcacc
atgagccgcgccgccgccaaaaaacgcttcaccgtacaagaccagatccgcgccaccgcc
cacgtcgagtgccgcaaagacagcgacgttatcgacgagatcccgatggcctacaaagac
atcgacgccgtgatggccgcccaatcctcgctggtggagatcgtccacacattacggcag
gtggtgtgcgtgaaggggtag
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