Nodularia spumigena: BMF81_01032
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Entry
BMF81_01032 CDS
T05403
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nsp
Nodularia spumigena
Brite
KEGG Orthology (KO) [BR:
nsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nsp03016
]
BMF81_01032 (rtcB)
Enzymes [BR:
nsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BMF81_01032 (rtcB)
Transfer RNA biogenesis [BR:
nsp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BMF81_01032 (rtcB)
Prokaryotic type
tRNA splicing ligases
BMF81_01032 (rtcB)
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GFIT
Motif
Pfam:
RtcB
DUF4514
Pellino_RING
Motif
Other DBs
NCBI-ProteinID:
AVZ29970
UniProt:
A0A2S0Q6R1
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All DBs
Position
complement(1249534..1250715)
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AA seq
393 aa
AA seq
DB search
MPYEKLEITTPSPVLSWANHPLASDETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKMPFTGEQLEGKLKKIRLDIEAAIPTGFNANKDVEKS
AANWQRWRDFSDLHPGVQDLESKAMKQMGSLGGGNHFIEVCLDTKNQVWLMLHSGSRNIG
NQLAQCHISTAKELAKMAVNKLPDPDLSYFIAGTPEFQAYWHDLQWAQDYARFNRDVMMA
RFKHIVEKYLAGGKATKPLLQVNCHHNYAEKEVHFNEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLMSRAKAKKAYTLDDLIDQTQGVECRKDTGVLDE
IPGAYKSIDQVMANQADLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccttacgaaaaattagaaattactacaccatcccctgttttatcttgggcaaatcat
cctttagcgtctgatgaaaccaagatggcaaaaaatgtggcatccctaccatttgtattt
aaacacgtagctttgatgccagatgttcacttaggaaaaggtgctttagttggttctgtt
atcgctaccaaagaagcaataattccggcggctgtgggcgtggatattggttgcgggatg
agcgctatcaaaatgccatttacaggtgaacaactcgaaggcaaactgaagaaaattcgc
ttagatattgaagcagcaattcctacgggatttaatgctaataaagatgtggaaaaatct
gccgctaattggcaacggtggcgggatttttccgacttacatccaggtgttcaagacctg
gaaagtaaagcgatgaaacaaatgggttctctagggggaggaaatcactttattgaagtt
tgcctcgatacaaaaaaccaagtttggctaatgttgcattctggttcacgtaacattgga
aatcagctagcacaatgccatattagtacagccaaagagttagcgaagatggcggttaat
aaactacctgaccctgatttgtcttacttcattgctggtacgccagaatttcaagcctac
tggcatgatttacagtgggcgcaagattacgcacgttttaaccgtgatgtcatgatggcg
cgttttaagcacattgttgagaaatatttggcgggaggaaaggcgactaaacctttatta
caggtcaattgtcaccacaattatgctgaaaaagaggtgcattttaatgaggatgtttat
gtaactcgtaagggtgcagttcgcgcccaaactgaagactatggcattatccccggttca
atgggagcaaaatcttttattgtgaagggtaaaggtaatgctcatagcttttgttcctgc
tcccacggggcaggacggttaatgtctagagctaaggcaaaaaaggcttatactcttgat
gatttgattgatcaaactcagggtgtagaatgccgcaaggatacgggtgttttggatgaa
attcctggtgcttataagtctattgatcaggtgatggctaatcaagctgatttggtggag
gttgttgctactctgaagcaggttgtttgtgtgaagggttaa
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