Neisseria wadsworthii: H3L96_01310
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Entry
H3L96_01310 CDS
T07067
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nwd
Neisseria wadsworthii
Pathway
nwd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3L96_01310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwd03019
]
H3L96_01310
03009 Ribosome biogenesis [BR:
nwd03009
]
H3L96_01310
Enzymes [BR:
nwd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H3L96_01310
Messenger RNA biogenesis [BR:
nwd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3L96_01310
Ribosome biogenesis [BR:
nwd03009
]
Prokaryotic type
rRNA processing factors
H3L96_01310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QMT35929
LinkDB
All DBs
Position
complement(252942..255833)
Genome browser
AA seq
963 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMQVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGDERQELKAAMAELDVPRGMSLIARTAGIGRSVEELQW
DFNYLLQLWQAIEEAGKAHQEPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVHDQVSE
FMSYVMPSNVGRLKLYQDHTPLFSRFQIEHQIESAFSRSVSLPGGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHIACPRCAGTGVIRGIESTALHV
LRIIQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVMLIPNIHLENPHY
EVTRVRIDDVDEDAAPSYKRVAEPEKEDTVPFSSNKATKAARVEPAVKGVRHDQPAPVIE
EKKDSWWDNFKSWFKGLFSGGKKEEAKPEPQRKSGNTRRNMKSNRHSGRRGGNRRNTGRS
AAANLDAEGGEKNREEAVNAQEQVKQTQSRRQSNRQEERNHERRDNRKERKEARESTGED
NVKAVQNEQQSNRRRNRKEHSNEDVVPAAQALVPIESANVTPVDAVDQVPEEKAVSEKPA
KSGKGNKAEQAAKSENAEKNRRSNRERNERNRSNDRRGGRGEKKRNIPSAEKIERNLMIP
AIGDRVRDAVAHVFGENKAAPVVVSVKGFEDEAANAPLVITIPEPVVDAPMPAPVAALFA
TEEDKEAAIIAESSAKVKEAVRMIVGEVEVEAEETAPQAEQPKPKQDTPAKPKRKAAAPK
SKKPEVDLGGLVLVQTDNSALAAAAQAEQPELPKGRRRSDVPRPAVQDSEAGEPLQQVET
TSS
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgctacgcaagccgaagagttgcgcgtagcaattgttgat
ggacaaaccctactggatctggacatcgaaacgctgggtaaagagcagcgtaaaggcaat
atctataagggtgtgattacccgcatcgaaccgtcgctggaggcctgtttcgttgattac
ggtaccgaccgccacggctttctcccgttcaaagaagtttcccgttcttatttccaagac
tacgaaggcggccgtgcgcgcatccaagatgtgctcaaagaaggcatgcaagttatcgtg
caggtggaaaaagacgagcgcggcaataaaggcgcggccttaaccactttcatcagcctt
gcaggccgctatttggttttgatgccgaacaatccgcgcggcggcggcgtgtcgcgccgc
atcgagggtgacgagcgccaagagttgaaagcggcaatggcggaattggacgtgccgcgc
ggcatgagcctgatcgcccgcacggcaggcatcggcagaagcgttgaagaattgcaatgg
gatttcaattatctgctgcaattgtggcaggcgattgaagaagcgggcaaagcgcatcaa
gagccgtatctgctctttatggaaagctcgctgctgatacgcgccatccgcgactatttc
cgacccgacatcggcgaaattctggtggataatcaggaagtgcatgatcaggtttcggaa
ttcatgagctatgtgatgccgagcaatgtcggccgcttaaagctttaccaagaccacacg
ccgctgttttcccgtttccaaatcgagcatcagattgaaagcgcgttttcacgcagcgtg
agcctgcccggcggcggcgcgattgttatcgaccacaccgaagcactggtttcgattgat
gtgaactctgcccgcgctacacgcggcgccgatattgaagacacggcgtttaaaaccaat
atggaagcggcggaagaagtggcgcgccagatgcgtttgcgtgacttaggcggcttggtg
gtaatcgactttatcgacatggaaaaccccaagcatcagcgtgatgtggaaaacgtgttg
cgtgatgccttgaaaaaagaccgcgcccgtgtgcaaatgggcaaactttcccgtttcggc
ctgctggagctttcccgccagcgcttgaaacccgctttgggcgaaagcagccatattgct
tgcccgcgctgcgcgggtacgggcgttatccgcggcatcgaatcgaccgcgctgcatgtg
ttgcgcatcattcaggaagaggcgatgaaagacaacacgggtgaagtgcatgcgcaagtg
ccggtggatgtggcgaccttcctgttgaatgaaaaacgtgctgaactgtttggtatggaa
gagcgtttggacgtgtcggtaatgctgattccgaatatccatttggaaaacccgcattat
gaagtaacccgcgtacggattgatgatgtagatgaagatgcggcaccgagttataagcgc
gtggcagaaccggaaaaagaagataccgtgccgttttcttctaacaaggcaaccaaagcc
gcgcgtgtggagccggcggtaaaaggcgtgcgccacgaccagcccgcgcctgtgattgaa
gagaaaaaagattcctggtgggataactttaaatcttggtttaaaggcctgttcagcggc
ggcaagaaagaagaagccaagcccgaaccgcagcgtaaaagcggcaatacccgacgcaat
atgaaaagcaaccgccatagcggccgccgtggcggtaaccggcgtaatacaggccgtagc
gccgctgccaatttagatgcggagggtggtgagaaaaaccgcgaagaggcggtaaatgcg
caagagcaagtgaagcaaacgcaaagccgccgccaaagcaaccgtcaggaagagcgcaat
cacgagcgtcgcgataatcgtaaagagcggaaagaagcgcgtgagtctaccggtgaggac
aatgtgaaagctgttcaaaacgagcagcaaagcaaccgccgccgcaaccggaaagagcat
agcaacgaagatgtggtgccggcggctcaggctttggtgccgatagaatcagccaatgtt
acgccagtggatgcggttgaccaggtgccggaggaaaaagcggtgtcagaaaaaccagcc
aaatcgggtaaaggcaataaagccgagcaggctgcaaaatccgaaaatgccgaaaaaaac
cgccgcagcaatcgcgagcgaaacgagcgtaaccgttcaaatgatcggcgcggcgggcgc
ggcgagaaaaaacgcaatattccttctgccgagaaaatcgaacgtaacctgatgattccg
gccatcggcgaccgtgtacgcgatgcagtggctcatgtgttcggcgagaataaagctgcg
cctgtggtggtgtcggtgaaaggttttgaggatgaagccgcaaacgctccgttggtgatt
acgattcccgaacctgtggtagacgcacctatgcctgcgcctgttgctgctttgtttgca
acagaggaagataaggaagctgctatcattgcggaaagcagtgccaaagtaaaagaagca
gtccgtatgattgtgggagaggtggaagtggaggcggaagaaaccgcgccgcaagctgaa
cagcccaaacccaagcaggatacgcctgcgaaaccgaagcggaaagcggctgcaccgaag
agcaaaaagcccgaagtggacttaggcggtttggtgttggtgcaaaccgataattctgct
ctggccgccgctgcgcaagccgaacagcccgagctgccgaaaggccgccgccgctccgat
gttccgcgccctgccgtgcaggattcggaagccggcgaacctttacagcaagtggaaacc
acttcttcttaa
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