Oryzias melastigma (Indian medaka): 112155854
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Entry
112155854 CDS
T07439
Name
(RefSeq) E3 ubiquitin-protein ligase Topors
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112155854
03036 Chromosome and associated proteins [BR:
oml03036
]
112155854
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
oml03037
]
112155854
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112155854
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112155854
UBL E3 ligases
112155854
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
112155854
Cilium and associated proteins [BR:
oml03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
112155854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
PWI
zf-ANAPC11
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
112155854
NCBI-ProteinID:
XP_024143591
Ensembl:
ENSOMEG00000021182
LinkDB
All DBs
Position
LG18:complement(1191128..1196765)
Genome browser
AA seq
1160 aa
AA seq
DB search
MPLTARGSSRRKRRRKAAEEQPEPAEPPAQVMAPTRMKLRRRDNAAAGPSAGGDALEAEG
RAGTRSSSRRKSKAAAAASSSASVRAAMAADETSPDSKCPICLDRFNNLAYLDRCLHRFC
FPCIQEWSHNKAECPLCKQPFSSILHSVRAEDDFKEYTPQPAPPHSSVAATVAMVAAMAA
RSDHHMRLMLRRHQAEDGREAATRRRRRERASRGGAVPEDRTGLWEWYLGSRHLPVTPSP
PPAALRNVSATSERARWRHANLLAARQRQQRERLAFRRSLYCQGIRVRGVAGPSALEGQR
DLSAESFREYPPHMNRMRRWVRRELKVLYGAHATLVDIVQRIIMEHLPRHGLEDTATIEE
ELRPFLLGRTEHFLHELLSFARSPLGMDNYDRLAIYEAFPGALNLDGLSSSSNSSSVIAI
SEEEEEGQRAGRGEEGDASDDVIQTGSCLSQSGWDDETPGPSYSTAEPSPLRTSFSPAPQ
EPTNGEPAEKGEEEVEIVGYKKPIAERTPELVQLSSDSEEEGQQKEAEPQQTAPPPAPPS
TSSLRREEQEAPRIPEGVAARRARSWSGSSERSLRSLSPATPPRRGPSSAQREGERRPKK
KRGGHGRKSGTLCNPNRSIYPPMLRRMASPSSSDSSLDAAWELRGAQVSPLSSLVSTPSR
CSSSSSPLCSSPPPRTPPTPALSPAECTHNAEKPGGKRKYKSRHLDDAKDPSWRPMGRER
GRGGGDGRKKKKRRRQREESQPASDPVHSRRSREERSPSVEIVYEGVATQPPHKRRRKRR
PQHSSPPVIITLDSDSSAGPAHNSASSSPLSSQQTVDFSDLPPLSLAPSAGVGRALDVGE
LPVNILDPGSDGSDLELTGRSQSRIDIQSESDVDVEKVEDAGDGGEGPITAGDGNGPGSD
MSRAPKGEPDGTRPGGSGENHTEVPSPPPAPLTTPTPPPPAEGDGEEPRPVLKLASPVQP
CSRNTPPPLKHKDAGCPQWPRPSEPPLWGEGPTIPPFMTLKRPPLNALFLMEPPAPSDPP
LPVYSPHRRDSTGPHPPSGAAAASVGGDSPSGVNCRPPLAPPTNAPPGPKGEELSEMLSR
LRSVLNDPHPESTPPPSYDADRPLDQHSPAPNAEFRLDRLLNRNALMPPDPHPPSRKFRS
EADASPPHRLPDPLRQSELS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcacggcacgaggctcttcccggaggaagaggaggaggaaggcggcggaggag
cagccggagcccgcagagcctccagcacaggtgatggcgcccaccaggatgaagctgcgt
cgccgtgacaacgccgccgccggtccatcagcaggaggcgatgccttggaagcggagggc
cgagcgggaacacgctccagcagccggaggaagagcaaagccgccgccgccgcctcctcc
tccgcctcggtgcgggcggccatggcggcggacgagacgtcgccggactccaagtgcccc
atctgcctggaccgcttcaacaacctggcgtacctggaccgctgcctgcaccgcttctgc
ttcccctgcatccaggagtggtcgcacaacaaggcggagtgtccgctctgcaagcagccc
ttctcctccatcctgcactccgtccgcgccgaggacgacttcaaggagtacacgccgcaa
ccggcgccgccccacagcagcgtggccgccaccgtcgccatggtggcggccatggcggcg
cggagcgaccaccacatgcggctgatgctgaggcggcaccaggcggaggacggcagggag
gccgccactaggaggcggaggagggagcgggcgtcccgcggcggtgccgtcccggaggac
aggacagggctgtgggagtggtacctcggctcccgccatcttcccgtcactccttcgcct
ccgcccgctgcgctccggaacgtcagcgccaccagtgagcgcgctcgctggcgccacgcc
aacctcctggcggcgaggcagcggcagcagagggagaggctggccttccgccgctccctg
tactgccaggggatccgcgtccgtggcgtggcggggccgtccgccctggagggccagcgc
gacctatcggcggagagcttccgcgagtacccgccccacatgaaccgcatgcggcgctgg
gtccgcagggagctgaaggtgctgtacggcgcccacgccacgctggtggacatcgtccag
cgcatcatcatggagcacctgccgcgccacgggctggaggacaccgccaccatcgaggag
gagctgcggcccttcctgctgggccgcaccgagcacttcctgcacgagctgctcagcttc
gcccgctcgccgctcggcatggacaactacgaccgcctggccatctacgaggccttcccc
ggcgccctgaacctggacggcctgagcagctcctccaacagcagctccgtcatcgccatc
tcggaggaggaggaggaggggcagagggcggggcgaggcgaggagggcgacgccagcgat
gatgtcatccagacgggaagctgcctcagccaatcaggctgggatgacgagactcctggc
ccctcctactccaccgccgagccatcgcctctgcgcacctcgtttagccccgccccccag
gagccaaccaatggggagccagcagagaagggggaggaggaggtagagatcgtcggatac
aagaagccgatcgctgagcgcacccccgagctcgtgcagctgtcctccgactctgaggag
gaggggcagcagaaagaggcggagcctcagcagaccgctcctccccccgcccctccctcc
acgtccagcctccgcagggaggagcaggaagctccgaggatccctgaaggggtggcggcc
cgccgcgctcgctcgtggtctggtagctcagagcgttccctgcgctcgctcagcccggcc
acgcccccacggcgaggacccagcagcgcccagagggagggcgaaaggaggcccaaaaag
aagagggggggccacgggaggaagagcggcactctctgcaaccccaaccgctccatctac
ccccccatgctgcgccgcatggcctcgccctccagctcagactcctccctcgacgccgcc
tgggagctgcgcggcgcccaggtgtccccgctctcctcgctcgtctccaccccctcccgc
tgctcctcgtcttcatcgccgctctgctcctccccgccgccgcggactccgcccaccccc
gccctgtcccccgcagagtgcacgcacaacgccgagaagcccggcgggaagaggaagtac
aagagccggcacctggacgacgccaaagacccgtcatggaggccgatgggtcgcgagagg
gggagggggggcggggacgggaggaagaagaagaagaggaggaggcagagggaggagtct
cagccggcgagcgacccggtccacagcaggaggtccagggaggagcgcagccccagcgtg
gagatcgtctacgagggcgtggctacgcagccgccacataaacgccgcaggaaacgccgg
ccgcagcacagcagcccgccggtcatcatcactctggacagcgacagcagtgctggcccc
gcccacaacagcgccagcagcagcccgctcagcagccagcagaccgtcgacttctctgac
ctgccccccctctcactagcgccctcagccggcgtgggccgggctctggacgtcggggag
cttcccgtcaacattctggacccgggttctgacgggtccgacctggagctgacgggccgg
tcccagagccgcattgacatacagagcgagagcgacgtggacgtggagaaggtggaggac
gccggcgacgggggggaggggccaatcacagcgggagacggtaacggtcctggttctgac
atgagccgggcccccaaaggagaaccggatggcaccagacctggggggagcggggagaac
cacaccgaggtgccgtcgcccccaccggcccccctcaccacccccacgccacctccccct
gcagagggagacggcgaggagccccgccccgttctcaaattggccagtccggtccagccg
tgcagtaggaataccccgccccccctgaaacacaaagacgctggctgtcctcagtggccc
cgcccctctgagcccccgctgtggggggaggggccaaccattccccccttcatgaccctg
aagagaccccccctgaacgccctgttcctgatggagccccccgccccatctgacccccca
cttcctgtctactcgccccaccgtagggactccactggcccccacccccccagcggtgct
gctgctgcttccgtgggcggagactctccctccggtgtcaactgcaggccccccttagcc
ccgcccaccaacgctccgcccggcccaaagggggaggagctatccgagatgctgagcaga
ctccgctcagtcctgaacgacccccaccccgagagcaccccccctccctcctacgacgca
gatcggccgctggaccagcacagccccgcccccaacgccgagttccgtttggaccgcctc
ctgaaccgcaacgccttaatgcctcccgacccccacccaccctccaggaagttcaggtct
gaggccgacgcctcgcccccccacagactcccggatcccctcagacagtctgagctcagc
tga
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