Oncorhynchus nerka (sockeye salmon): 115143919
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Entry
115143919 CDS
T07952
Name
(RefSeq) retinoic acid receptor alpha-A-like isoform X1
KO
K08527
retinoic acid receptor alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115143919
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
one03310
]
115143919
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
115143919
Nuclear receptors [BR:
one03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
115143919
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
115143919
NCBI-ProteinID:
XP_029540245
EnsemblRapid:
ENSONEG00000036798
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Position
LG16:2994296..3216902
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AA seq
495 aa
AA seq
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MYESVDVVGLNPSPNPFLMMDYYNQSRGCLIPEKGLVPGAPHHYSTSIRNQHWNGSNHSI
ETQSTSSEEIVPSPPSPPPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKSMV
YTCHREKNCIINKVTRNRCQYCRLQKCLEVGMSKESPRTSSKGGMVLGPQPPPPPLETGR
GQTGGPGADRAAPPAVRNDRNKKKKDEKKQESTESYVLSIETEQMINRVSKAHKETFPSL
CQLGKYTTSNSSERRVALDVDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLK
AACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMD
DAETGLLSAICLLCGDRQDLEQADKVDVLQEPLLEALKIYVRKRRPHKPHMFPKMLMKIT
DLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEGLESGATGTRTSGAPPGSCSPSLS
PSSAQSSPSPTTQSP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagagtgtggacgtcgtgggactgaatcccagcccgaacccgtttttaatgatg
gattactacaaccagagcagaggatgtttgatcccagagaaaggacttgtgcccggagcg
cctcatcactacagcacgtctatcagaaatcaacactggaacggctcgaatcactcgata
gagacacagagtaccagctcagaggagatagtgccaagcccgccatcgccgcctcctccc
ccgagggtctacaagccctgcttcgtgtgccaggacaaatcctcaggataccactatgga
gtcagtgcctgcgaaggttgcaagggcttctttcggaggagcatccagaagagcatggtg
tacacatgtcaccgggagaagaactgcatcatcaacaaggtcaccaggaaccgctgccag
tactgccggctgcagaaatgcttggaagtgggcatgtccaaggagtctcctcgcaccagc
tccaaaggcgggatggtgttgggcccccagccgccgcccccaccattggagaccgggagg
ggacagactggggggccaggggcggacagggcagctcccccggcggtgaggaacgaccgg
aacaagaagaagaaggatgagaagaagcaggagagcacagagagctacgtgctgagcatt
gagacggagcagatgatcaacagggtcagcaaggcgcataaggagaccttcccttcgctc
tgccagctgggcaaatacactacgagtaacagctcggagaggcgtgtagctctggacgtg
gacctgtgggacaagttcagtgagctgtccaccaagtgtatcatcaagacggtggagttc
gccaagcagcttcctggcttcaccaccctcaccatcgctgaccagatcaccttgctcaag
gccgcctgtctggacatactgattctgcggatctgcacgcgctacacaccggagcaggac
accatgacgttctctgatggcctgacgctaaaccgcacccagatgcacaatgccggcttc
ggaccgctcaccgacctggtgttcgccttcgccaaccagctcctccccctggagatggat
gatgctgagacggggctgctcagcgccatctgtcttctgtgtggagatcggcaggacctg
gagcaggcagacaaggtggacgtactacaggagcccctactggaggctctgaagatctac
gtgaggaagaggaggcctcacaaaccacacatgttcccaaagatgctgatgaaaatcacc
gacctgaggagcattagcgccaaaggagctgagcgtgtcatcaccctgaagatggagatc
ccgggctccatgccccctctcatccaggagatgctggagaactctgagggtctggagagc
ggggccacaggcacccggaccagcggagcccccccaggcagctgcagccccagcctgtcc
cccagctccgcccaaagcagccccagccccaccacacagtcgccgtag
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