Oncorhynchus tshawytscha (Chinook salmon): 112248021
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Entry
112248021 CDS
T05605
Symbol
spata5l1
Name
(RefSeq) LOW QUALITY PROTEIN: spermatogenesis-associated protein 5-like protein 1
KO
K26051
ribosome biogenesis protein SPATA5L1 [EC:
3.6.4.10
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112248021 (spata5l1)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.10 non-chaperonin molecular chaperone ATPase
112248021 (spata5l1)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
112248021 (spata5l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_16
AAA_5
RuvB_N
AAA_22
TIP49
AAA_14
AAA_33
Rad17
AAA_11
ABC_tran
nSTAND3
bpMoxR
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
112248021
NCBI-ProteinID:
XP_042187021
LinkDB
All DBs
Position
LG12:complement(75514804..75527020)
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AA seq
772 aa
AA seq
DB search
MEEVSLRVLPMDPADRGTQRVRLGPGLMASLGLGLGSPVLVALSGGSCLCTAWPRPDLAD
GFIQIDMKCCSSNLILNKAIPTHLSLPLTPSPNPSPSSSPLPPSPCLSPSLTPVFCPKLK
GIRITVVVQSVEFRKTTPPSFIHELVKDMLKGTYVHQKHVIDVGDYDTDIKLIVIESLNP
ESTVTGLVTSKTGVEITGTRTLRYYRGQLQEQPQVLLGGLEEVSASLREMLHLPLQYPAT
LGSLGLSCPRGVLLAGPPGVGKTLLVRCLVGEVGASLITVRGPEVVGSRPGESEERLRAV
FGRARAAAEEGPCVLFLDELDSLCPRRTGSSAPENRLVAQLLTLMDGMDQSDRFLIVGAT
NQPDSLDPALRRPGRFDREVVIGAPTAQQXLSILSCCCQAMPVCVSVDWAELAQRTTGYV
GADLSALCREAAMLAIRHNTPGSGEQTITMEHFLSALKTVRPSCLRGSLGRTDLPAVSWE
QIGGLEEVKVKLQQSIEWPMRYPEAFVRLGLSRPRGVLLYGPPGCAKTTLVRAAATSSHC
SFLSVSGADLYSPYVGDSEKALAQLFRQARACAPSILFLDEVDSLIGSRSEGHVPQSAQT
RLLSVLLNELDGVGFRTLERRGAGKTLQAEGVEHHQQQEHLEYQEVCNKEVMIVAATNRP
DSLDSALLRPGRLDQIIYVPPPDLQARVSILQVCTEKMPLDDDVCLEELARHTDLYSGAD
LENLCLQAALLTLQDESMEASSIKHRYFLQSLQRMTPSLSTQQLQTYKNLFR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtgtctctgagagtgctgccaatggacccagcagaccggggaacccagagg
gtcagactgggcccagggctgatggcctccctggggttggggctgggctctcctgttctg
gtggctctgtctggagggtcctgtctctgtactgcctggcccaggcctgacctggctgac
ggattcatacagatagacatgaaatgttgttcttcaaatcttatcttaaacaaagctata
cccacacacctcagcctacccctaacccccagccctaaccctagccccagctctagccca
cttccccccagcccatgcctaagtcctagtctcaccccagtcttctgccccaagctgaaa
ggcatccgaataacagtggtggttcagagtgtggagttccggaaaaccacccctcccagt
ttcatccatgaactagtgaaggacatgctgaaagggacatatgtccaccagaagcacgtg
atagatgtgggtgactatgacacggacattaaactgatcgtcatcgagagcctgaaccca
gagtccaccgtgactggtttggttacatctaagacaggggtggaaataacggggacgagg
accctccggtactacagaggacagctccaggagcagccccaggtcctactgggaggactg
gaagaggtgtcagcgtctctgagagagatgttgcacctgcctctgcagtaccctgctacc
ctgggctccctgggtctctcctgccccagaggagtgctccttgctgggccgccgggggtc
ggaaagaccctgctggtccgctgcctggtgggggaggtgggggccagcctgatcacagtc
agaggaccagaggtagtagggtctcggccaggggagagtgaggagaggttgcgggcggtg
tttggtcgggcgcgggcagcggcagaggaagggccttgtgtgttgttcctggatgagctg
gactctctctgtcccagacggactggatcctccgcacccgagaaccggctggtcgctcaa
ctgctcacgctcatggacggcatggaccaatcagatcgcttcctcatcgtaggagccact
aatcagccggacagcttggacccggcactacggaggcctgggaggttcgacagagaggtg
gttatcggtgcccccacagcacagcagtagttgtccatcctgtcttgctgttgccaggcc
atgccagtgtgtgtcagtgtggactgggcagagctggcccagaggactacaggatatgtg
ggtgctgacctcagtgctctctgccgtgaggctgccatgctggctatacgacacaacaca
ccgggttcaggggagcagactatcaccatggaacacttcctgtctgccctgaagactgtc
cgtccatcctgtctgagaggcagtctgggacggacagacctcccagccgtctcctgggaa
cagataggaggcctggaggaagtcaaagtcaaactacaacagagtatagagtggccaatg
cgttacccggaggcgtttgtgcgtctgggtctgtcccgtcccaggggggtgttgctctac
ggtcccccaggctgtgctaagaccaccctggtcagggctgcagctacctcctcccattgc
tccttcctgtcagtcagcggggctgacctctactctccatatgtaggcgattcggagaag
gccctggctcagctctttcgtcaggcgcgggcctgcgctccctccatcctgttcctggat
gaggtggactctctgattggctcccggtcagaaggacatgtccctcagagtgcccagacc
cgcctcctgtctgtgctgctgaatgagctggacggggtaggctttaggaccctggagagg
agaggagcagggaagaccctacaggctgagggagtggagcaccaccagcaacaggaacat
ttggagtaccaggaggtgtgtaacaaggaagtgatgattgtagcggccactaacagacca
gactctctggacagtgccctcctaaggcctggaagactggaccagatcatctatgtaccc
ccacctgacctacaggcgcgtgtgtccatcctgcaggtgtgtacagagaagatgcctctg
gatgatgatgtgtgtctggaggagctggctagacacactgacctttactctggagcagac
ctggagaacctttgtctgcaggcagctctgttgaccctccaggatgaaagtatggaagct
tctagtatcaaacaccgatacttcctccagtctttacagaggatgactccctctctttcg
acccagcaactacagacatacaaaaacctcttcagatga
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