Salipiger abyssi: Ga0080574_TMP4049
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Entry
Ga0080574_TMP4049 CDS
T04681
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
paby
Salipiger abyssi
Pathway
paby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
paby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ga0080574_TMP4049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
paby03019
]
Ga0080574_TMP4049
03009 Ribosome biogenesis [BR:
paby03009
]
Ga0080574_TMP4049
Enzymes [BR:
paby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Ga0080574_TMP4049
Messenger RNA biogenesis [BR:
paby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Ga0080574_TMP4049
Ribosome biogenesis [BR:
paby03009
]
Prokaryotic type
rRNA processing factors
Ga0080574_TMP4049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
APZ54383
UniProt:
A0A1P8UYC3
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All DBs
Position
3455899..3458796
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AA seq
965 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEEAALAAEADDEDESDREKSRARNSRSRS
RRSRSRSKAEKTKSDDKTTSADVSEIKGMETIDLDAESQGEGSAGDDTAEGLSPMELVAE
APVAEPAETAEEAGSADEAPAAAEEASKPDAAEAAPVEDEAPAAAPAADESDDDDSDDDT
DDDAPRDDSIESVADDDTEEDIRPKRKPRPRKYKIQEVIKVRQIMLVQVVKEERGNKGAA
LTTYLSLAGRYCVLMPNTARGGGISRKITNATDRSKLKQIAQEIDVPKGAGLIIRTAGAK
RTKTEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNREIDEVHVEGE
KGYRIAKDFMKMIMPSHAKNVKHYVDPMPLFARYQVESYLSSMFNPTVQLKSGGYIVIGV
TEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKN
NAAVEKKLKDKLKTDRARIQVGRISGFGLLEMSRQRLRPGMIEATTQPCPACHGTGLIRS
DDNMALNILRQIEEEGTRRRSREVLVKCPVGIANYLMNQKREHVAQIEARYGMAVRIEGD
MHLVSPDFSMEKFKTATRNVAEVLAPVVSVDTSLMDQIDEDIPAEEEEDEATGEVTPPEA
ENGSDEDSKPKKRRRRRRRSRSKNKENGEDNGNGSGDEGDSNDASDKPAETKAEPAPAET
ADDAAPAAEEAAPASEEAEPPAKPKRTRSRSRSKTPKAAPAEDSAEAAPAAEPTPAEPAA
EPTEAPASEEMPATEPVAAEPALEPVAEAPVAEPVTGDSPAAEPVAEEAPAQEPAAPEAP
VAEDSPAEDTPAAEAPAPSEESTTEAPAEEQAEAPAEPEPVAETVEAEDDGEDKPKRRGW
WSIGR
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgacgccacccacgcggaagaaacccgcgttgtggtggtc
gacggaaacaaggtcgaggaattcgacttcgaatcggagaacaagcggcagctagccggc
aatatctatctcgccaaggtcacgcgggtagagccctcgctccaggcggcctttgtggat
tacggcggcaaccgccacggtttcctcgccttctccgagatccatcccgattattaccag
atccccgtcgccgaccgtcaggcgctgatggaggaagaggccgcgctcgccgccgaggcg
gatgacgaggacgaatccgaccgcgaaaagtcgcgcgcccgcaattcccggtcgcggtcg
cgccggtcgcgctcgcgctccaaggcggaaaaaaccaagagcgacgacaagaccacatcg
gcggatgtctccgaaatcaaggggatggaaaccatcgacctcgacgcggagtcgcagggc
gagggcagcgcgggcgacgacaccgccgaggggctctcccccatggagctggtcgccgag
gccccggtcgcggaacctgccgaaaccgccgaagaggcgggcagcgccgatgaggcgccc
gccgcggccgaagaggcgtcgaaacccgatgcggcagaggctgcgcccgtcgaagacgag
gcgcccgcagccgcgcctgcggccgacgagagcgacgacgacgacagcgacgacgatact
gacgacgacgccccgcgcgacgacagcatcgaatccgtcgccgatgacgacaccgaggaa
gacatccgtcccaagcgcaagccgcgcccgcggaaatacaagatccaggaagtcatcaag
gtgcgccagatcatgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcg
ctcaccacctacctgtcgctggcgggccgctactgcgtgctgatgcccaacaccgcccgg
ggcggcggcatctcgcgcaagatcaccaacgccaccgaccgttccaagctcaagcagatc
gcgcaggagatcgacgtgcccaagggcgcgggcctgatcatccgcaccgccggcgccaag
cgcaccaagaccgagatcaagcgcgactacgaatatctccagcggctctgggaacagatc
cgcgagctcacgctcaaaagcatcgcgcccgccaagatctatgaagagggcgacctgatc
aaacgctcgatccgcgacctctacaatcgcgagatcgacgaagtccatgtggaaggcgaa
aagggctaccgcatcgccaaggacttcatgaagatgatcatgccgtcccacgccaagaac
gtgaaacactatgtcgatccgatgccgctcttcgcgcgctatcaggtcgagagctatctc
agctccatgttcaacccgacggtgcagctcaagtcgggcggctatatcgtgatcggcgtc
accgaggcgctggtcgccatcgacgtgaactcgggccgcgccaccaaagagggctcgatc
gaggaaaccgcgctcaagaccaacctggaagccgccgaggaggtggcccgccagctccgc
ctgcgcgacctggccggtctgatcgtgatcgacttcatcgacatggaagagcgcaagaac
aacgccgccgtcgagaagaagctgaaggacaagctcaagaccgaccgcgcccgcattcag
gtgggccggatctcgggcttcggcctgctcgaaatgtcgcgccagcgcctgcgccccggc
atgatcgaggcgacgacccagccgtgcccggcctgccacggtaccggcctgatccgctcc
gacgacaatatggcgctcaacatcctgcgccagatcgaggaggagggcacccgccgccgc
tcgcgcgaggtgctggtgaaatgcccggtgggcatcgccaactacctgatgaaccagaag
cgcgaacatgtggcgcagatcgaggcccgctacggcatggcggtgcggatcgagggcgac
atgcatctggtctcgcccgatttctccatggagaaattcaagaccgccacccgcaacgtc
gccgaggtgctggcgccggtggtctcggtcgatacctcgctgatggatcagatcgacgag
gacatccccgccgaggaggaagaggacgaggccacgggcgaggtcacgccccccgaggcc
gaaaacggttcggacgaggacagcaagcccaagaaacgccgtcgtcgtcgccgccgctcg
cgctccaagaacaaggagaacggtgaggacaatggcaacggctccggcgacgagggcgat
tcgaacgacgcctccgacaagcccgccgagaccaaggcagagcccgcgccggccgaaacc
gccgatgacgccgcacccgcggcggaagaggcggcccccgcgtccgaggaggccgagccc
ccggccaagccgaaacggacccgttcgcgctcgcgctcgaaaaccccgaaagcggcccct
gccgaggacagtgccgaggcagcccccgccgcggagccgacgcccgccgagcccgctgcc
gaacccaccgaggcaccggcctccgaagagatgcccgccaccgagcccgtcgccgcagag
ccggccctggaaccggtcgcggaagcgcctgttgccgagccggtgaccggggacagcccc
gcagcggaaccggtcgcggaagaggccccggcgcaggagcctgctgctcccgaagcgccc
gtcgcggaagacagccccgccgaggatacgcccgctgccgaggcgccggccccgtccgag
gaatcgactaccgaggcgccggcagaagagcaggccgaagcgcccgccgagccggaaccc
gtggccgagacggtggaggccgaggacgatggcgaggacaagcccaagcggcgcggctgg
tggtccatcggccgctga
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