Paraburkholderia acidiphila: FAZ97_09840
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Entry
FAZ97_09840 CDS
T07262
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pacp
Paraburkholderia acidiphila
Pathway
pacp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pacp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAZ97_09840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pacp03019
]
FAZ97_09840
03009 Ribosome biogenesis [BR:
pacp03009
]
FAZ97_09840
Enzymes [BR:
pacp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FAZ97_09840
Messenger RNA biogenesis [BR:
pacp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAZ97_09840
Ribosome biogenesis [BR:
pacp03009
]
Prokaryotic type
rRNA processing factors
FAZ97_09840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGZ55189
UniProt:
A0A7Z2G5K2
LinkDB
All DBs
Position
1:2189174..2192416
Genome browser
AA seq
1080 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFREGIDMRGARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPDGMSIIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQAGQSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVNKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALRHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKEHTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVGVVLIPNKHLET
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTAEAKPKQEAAVKGITPER
PAPSAPVKTAEAAPVAAQVAVTPAGGGFFGWVKRLFGAPAAAPAPAPVAQPEKATRPTRE
ARTERGEKSGGDRNRNRRTGGRDAAGRGEGAGGARTGQQAGRREEREPREPREPREAREG
RGAREQREPREQREPREQREPRESREARAEREQRIERVERGQDRSDTTAEAGAARGERQE
RGERRERGERGERGERNEQRRRQQAEAAEAQEERLDAASAGAEGVEATQTEELPEGMSAG
ADEEGAPREGEERRRRRRGRRGGRRERETDAAGLTPGADAPEGEEEAAPAQPAVEQPAIA
AQLHEAPAVEARTEAVVETVVTALPAAAVVAEAAHVAAVVTATPVETVAPAAEQVPAPAP
AEAAPASVETAHGVEPKAEEPAAPMAPVAPVAPAAADEPVAPAAPAEPVQAETQPVVVRE
DRVEAPQTEVPAAVPAAQPEPVQEVIAAAPAVIAPPEPAAQHPAPVAAAAPSPAPAAADT
LRPMLESAGLVWVNTDADKLHAAQQAAAQLVKPARAPRERKALPPVDSTPMQQVETTRQP
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgctgttcaacgcgacacagcaggaagaactgcgtgtcgccatcgtcgat
ggacagaagctcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaggggatcgtcacccgtatcgagccttcgctcgaggcgtgtttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttccgcgaa
ggcatcgacatgcgcggtgcgcgcatccaggacgccctcaaggaaggccaggaactgatc
gttcaggtcgagaaggaagagcgcggcaacaagggcgccgccctcaccacgttcatctcg
ctcgccggccgctacctcgtcctcatgccgaacaacccgcgcggcggcggcgtctcgcgc
cgcatcgagggcgacgaccgtcaggaactgcgcgaaaccatggcgcagctgcaactgccg
gacggcatgagcatcatcgcgcgcacggccggcatcggccgctccgccgaagagctccag
tgggacctgaactacctgctgcaactgtggcgcgccatcgaagccgcgtcgcaggccggc
cagtccggtcagcccatgctgatctacctggaatcgagcctcgtcattcgcgcgatccgc
gactacttccagcccgacatcggcgaaatcctcatcgacaccaccgagatctatgaccag
gcacgcgccttcatggatatcgtgatgccggataatgtcaacaaggtgaagcggtatcac
gacgacgtgccgcttttctcgcgtttccagatcgagcaccagatcgagacggcttactcg
cgcacggtgccgctgccctcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gccatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaaccgccgcg
cgcaccaacctcgaagccgccgacgaagtggcgcgccagttgcgcctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggagtccgccaagagccagcgcgaagtcgag
cagcgcctgaaggacgcgctgcgccacgaccgcgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggaactctcgcgtcagcgtctgcgccccgccctctcggaaggcagc
cacgtcacctgcccgcgctgtaacggcacgggtcatatccgtgataccgaatcgtcggcg
cttcaggtcctgcgcatcatccaggaagaggcgatgaaggagcacaccgcggcgatccat
tgccaggtgccggtcgaagtgaccgccttcctgctcaacgaaaaacgttcggaaatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcatctcgaaacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcacgcctcgacgatccgcgcgct
tcgtggaagatggccgaggaagcggcccgcgaactcgagtcggaaaccggctacagcaag
cgcacggccgaagccaagcccaagcaggaagccgcggtgaagggcatcacgccggagcgt
ccggcaccgagcgcaccggtcaagacggccgaagccgcaccggtcgccgcgcaagtggcc
gtgacgcccgcgggcggcggcttcttcggctgggtcaagcgcctcttcggcgcgccggct
gcggcacccgcaccggcaccggttgctcaacccgaaaaggccacccgtccgacccgcgaa
gcgcgtaccgagcgcggcgagaagagtggcggcgaccgtaaccgcaatcgccgcaccggc
ggtcgcgacgcggcaggccgcggcgaaggcgcaggcggcgcacgcaccggccaacaggct
ggacgccgtgaagagcgcgaaccgcgcgagccacgcgaaccgcgtgaagcacgcgaaggc
cgtggcgcccgcgagcaacgcgagccgcgtgaacaacgtgagccgcgcgagcaacgtgaa
ccgcgtgaaagccgcgaagcacgcgccgagcgcgaacagcgcatcgagcgtgtcgagcgc
ggccaggaccgtagcgatacgacggcggaagccggcgccgcacgcggcgagcgccaggaa
cgcggcgagcgacgcgaacgtggtgaacgcggcgagcgcggtgaacgcaatgagcagcgt
cgccgtcagcaagccgaggctgcggaagcccaggaagagcgtcttgacgccgcatcggca
ggcgccgaaggcgtcgaagcgacgcagacggaagaactgcccgaaggtatgagcgcgggt
gccgacgaagaaggcgcgccgcgtgaaggcgaagagcgtcgtcgtcgtcgtcgtggccgc
cgtggcggtcgccgcgagcgcgaaacggatgcagcgggcctcacgccgggcgcggacgcg
ccggaaggcgaagaggaagccgcaccggcccaaccggccgtcgagcagcctgccattgcc
gcacaactgcatgaagcaccggccgtcgaagcgcgcaccgaggcagttgtcgagactgtc
gtgaccgcactgccggccgccgccgtcgtcgccgaagccgctcacgtggccgccgtcgtg
acggctacgccggtcgaaaccgttgcgcccgctgcagagcaagttccggctccggcacct
gccgaagccgcaccggcgagcgtggagaccgcgcatggggtcgagccgaaggccgaggaa
cccgcagcaccgatggctcctgtcgctcctgtggcgcctgccgcagcggacgaacctgtc
gcgccggcagccccggccgagccggtccaggccgaaacgcagcccgtagtcgtgcgtgaa
gaccgcgtcgaagcgccgcagaccgaagtgccggcggctgtgcccgccgcgcaaccggag
ccggtgcaggaagtgatagccgcggctcctgcggtcatcgcgccccccgagccggctgca
cagcatccggctccggtggcagcggcggcgccctcgccggctccggccgccgcggacacg
ctgcgcccgatgctggaatcggcgggtctcgtctgggtcaataccgacgccgacaagctg
cacgccgcccagcaagccgccgcgcagctggtgaagcccgcacgcgcgccgcgcgagcgc
aaggcgctgccgccggtcgacagcacgccgatgcagcaggtcgaaaccacgcgccagccg
taa
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