Pseudomonas alloputida: LU682_021305
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Entry
LU682_021305 CDS
T09345
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pald
Pseudomonas alloputida
Pathway
pald03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pald00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LU682_021305 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pald03019
]
LU682_021305 (rne)
03009 Ribosome biogenesis [BR:
pald03009
]
LU682_021305 (rne)
Enzymes [BR:
pald01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LU682_021305 (rne)
Messenger RNA biogenesis [BR:
pald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LU682_021305 (rne)
Ribosome biogenesis [BR:
pald03009
]
Prokaryotic type
rRNA processing factors
LU682_021305 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WJR15685
LinkDB
All DBs
Position
4602576..4605851
Genome browser
AA seq
1091 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLTVPGDMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKVKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDNPEVLNNQSSYEIAAAEAEEAPQPTATRTLVRQEAAVKTAPARANAPVPAAA
EEPQAAAPVAPAPSAPEPSLFKGLVKSLVSLFAGKDEPAAAPVAPAAEKPAAERSPRNEE
RRNGRQQSRNRNGRRDEERKPREERAERAPREERAPREERAPREERAPREERAPREERAP
REERAPRQPREDRRGNRGEERVRELREPLDATPPAEREERQPREERVAREERAPREERAP
REERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPREERAPRPPREE
RQPRAAEEATEQAAELAEEQLPGEELLQDEQEGTDGERPRRRSRGQRRRSNRRERQRNAN
GELIDGSEEEGSEEQPQQHQATELGAELAAGLAVTAAVASSNISSDAEAQANQQAERATA
EVAAVAETDNSEAAQPVEQVEAATKAQEASVAPAVEQPVTEPVAAAEATAEPVVEVAPQP
VAEDAPAVEPVVVAETAVTETPAEAPVVEAGEIEQAPAVVEVAPVAAQPAPVVEAQPEVV
AEPAPAVVEPAPAVVEPATVMLANGRAPNDPREVRRRKREAEAAAKAAQEAAAASQEPAL
EAADEHKPHHG
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcgactcaacccgaagagttgcgtgtagccctggtggac
ggccaacgtctctacgacctggacatcgagtccggcgcgcgcgagcagaaaaaggccaac
atctacaaaggcaagatcacccgcatcgaacccagcctcgaagccgccttcgtcgacttc
ggctccgaacgtcacggcttcctgccgctgaaagaaatctcccgcgagtacttcaagaag
gccccggaaggccgggtcaacatcaaggaagtgctcagcgaaggccaggaagtcatcgtt
caggtcgagaaggaagagcgcggcaacaaaggcgccgccctcaccaccttcatcagcctg
gccggccgctacctggtgctgatgcccaacaacccgcgtgccggtggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctgaccgtaccgggc
gacatgggcctgatcgtgcgcaccgccggccttggccgcagcagcgaagaaatgcagtgg
gacctggactacctgctgcagctgtggaccgccatcaaggaagcgtccctggaccgcgcc
gcgccattcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctg
cgtcaggacatcggcgaagtactgatcgacagcatcgacgcccaggaagaagcgctgacc
ttcatccgccaggtgatgccgcagtacgccagcaaggtcaagctgtacgaagacagcgta
ccgctgttcaaccgcttccagatcgaaagccagatcgagaccgccttccagcgcgtggtc
gacctgccgtccggcggttcgatcgtgatcgacccgaccgaagccctggtgtcgatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgctgttgaagagcgcgtg
cgtgaatgcctggaagccgaccgcgcccgcgtgcaggttggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgtctgcgcccatcgctgggcgaaagcagcggcatcgtc
tgcccacgctgctccggcaccggcatcatccgtgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcaccgctgaagtgcgtgctcaagtg
ccgatcccggtagccgcgttcctgctgaacgaaaagcgtaactcgatcaccaagatcgag
ctgcgcacccgtgcgcgcatcatcatcctgccgaacgaccacctggaaaccccgcacttc
gaagtccagcgcctgcgcgacgacaaccctgaagtgctgaacaaccagtccagctacgaa
atcgccgccgccgaagccgaagaagcgccgcaaccgaccgccacccgcaccctggtacgc
caggaagccgcagtgaagacggccccggcccgcgccaacgcaccggtaccggccgccgct
gaagagccccaggctgccgcgccggtcgcccctgccccgagcgctccggagccaagcctg
ttcaaaggcctggtgaagtcgctggtgagcctgttcgccggcaaggacgagcctgccgcc
gcgccagtggctcccgccgccgaaaaaccggctgccgagcgcagcccgcgcaacgaagaa
cgccgcaacggccgccagcaaagccgcaaccgcaacggccgccgcgacgaagaacgcaag
ccgcgtgaagagcgtgccgagcgcgcaccgcgtgaagagcgtgcaccgcgcgaggaacgc
gccccacgcgaagagcgtgcaccgcgcgaggaacgtgccccacgtgaagagcgtgcaccg
cgtgaagaacgtgcgccgcgccagccacgcgaagaccgccgtggcaaccgcggcgaagag
cgcgttcgcgaactgcgcgagccgctggacgctaccccgccagccgaacgcgaagagcgc
cagccgcgtgaagaacgtgtagcccgcgaagagcgagcgccacgtgaagagcgcgcaccg
cgtgaagagcgtgctccacgtgaagaacgcgcaccgcgtgaagagcgtgccccacgtgaa
gaacgggccccacgtgaagaacgcgcccctcgcgaagaacgtgctccacgtgaagaacgc
gcaccgcgcgaagagcgtgctccacgcgaagaacgcgccccgcgcccaccacgcgaagag
cgccaaccacgcgctgccgaagaagcaaccgaacaggcagccgagctggccgaagagcaa
ctgccaggcgaagagctgctgcaagacgagcaggaaggcaccgatggcgagcgcccgcgc
cgccgctcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgcaatgccaac
ggcgagctgatcgacggcagtgaagaagaaggcagcgaagagcagccacaacagcaccag
gccaccgagctgggtgccgaactggctgctggccttgccgtgacggctgctgtcgccagc
agcaacatcagctccgacgcagaagcccaggccaaccagcaggccgagcgtgctaccgcc
gaagtcgctgccgttgcagaaaccgacaacagcgaagccgcccaaccggtcgagcaggtc
gaagcggccaccaaagctcaagaagcgtccgtggccccagcggtcgagcagccggtcacc
gagccagtggccgcagccgaggcaactgccgagcctgtggtcgaagtggccccgcagcct
gtcgctgaagatgcacctgctgttgagccggtcgtggttgcagaaaccgcggtcactgaa
accccggcagaagccccagtggtagaagccggtgaaatcgaacaggccccggccgtggtc
gaagtcgctccggttgccgcacagcctgccccggttgtcgaagcccagccagaagtggtg
gccgagcctgcacctgcggtggtcgaacctgcacctgcagtggtcgaacctgccactgtc
atgctggccaacggccgtgcaccgaacgacccacgtgaagtgcgtcgccgcaagcgggag
gccgaggctgctgccaaagcggcacaggaagctgctgcagcttcccaggaaccagccctg
gaagccgccgatgagcacaaacctcatcacggctga
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