KEGG   PATHWAY: aof03420
Entry
aof03420                    Pathway                                
Name
Nucleotide excision repair - Asparagus officinalis (garden asparagus)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
aof03420  Nucleotide excision repair
aof03420

Other DBs
GO: 0006289
Organism
Asparagus officinalis (garden asparagus) [GN:aof]
Gene
109819980  [KO:K03012]
109820641  [KO:K03017]
109821912  [KO:K10140]
109821994  [KO:K04802]
109822023  [KO:K10740]
109822202  [KO:K02335] [EC:2.7.7.7]
109822285  [KO:K03009]
109822418  [KO:K23720]
109822475  [KO:K10845]
109823232  [KO:K02327] [EC:2.7.7.7]
109823626  [KO:K10841]
109823652  [KO:K10843] [EC:5.6.2.4]
109823749  [KO:K02324] [EC:2.7.7.7]
109824707  [KO:K03007]
109825191  [KO:K03144]
109825382  [KO:K03014]
109825400  [KO:K03505]
109825496  [KO:K10570]
109825967  [KO:K03504]
109825984  [KO:K10610]
109826468  [KO:K03144]
109827408  [KO:K03006] [EC:2.7.7.6]
109827778  [KO:K06634]
109828983  [KO:K03868] [EC:2.3.2.32]
109829039  [KO:K03013]
109830164  [KO:K03008]
109830304  [KO:K03007]
109830469  [KO:K10842]
109830532  [KO:K03013]
109831389  [KO:K10844] [EC:5.6.2.3]
109831692  [KO:K03013]
109832463  [KO:K03016]
109832946  [KO:K10756]
109834585  [KO:K03008]
109835422  [KO:K03015]
109836584  [KO:K02328]
109837187  [KO:K03142]
109837420  [KO:K10739]
109837436  [KO:K10756]
109837638  [KO:K03012]
109837752  [KO:K10140]
109837785  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
109837963  [KO:K10755]
109838651  [KO:K10755]
109839311  [KO:K10848] [EC:3.1.-.-]
109839540  [KO:K03010] [EC:2.7.7.6]
109839562  [KO:K10849]
109840114  [KO:K06634]
109840439  [KO:K10739]
109841114  [KO:K03011]
109841292  [KO:K10839]
109842304  [KO:K10839]
109843874  [KO:K10754]
109844293  [KO:K10756]
109844419  [KO:K10839]
109844610  [KO:K10838]
109844619  [KO:K07466]
109844953  [KO:K03868] [EC:2.3.2.32]
109845025  [KO:K10839]
109845381  [KO:K10843] [EC:5.6.2.4]
109845383  [KO:K10756]
109846322  [KO:K10609]
109846470  [KO:K02325] [EC:2.7.7.7]
109848274  [KO:K03141]
109848350  [KO:K07466]
109848632  [KO:K10609]
109848719  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
109849301  [KO:K07466]
109849310  [KO:K10839]
109850145  [KO:K04802]
109850270  [KO:K10839]
109850380  [KO:K03015]
109850458  [KO:K10846]
109850653  [KO:K03143]
109850670  [KO:K10739]
109850844  [KO:K03017]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
aof03020  RNA polymerase
aof04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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