KEGG   PATHWAY: apm00970
Entry
apm00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Alpha proteobacterium HIMB5
Class
Genetic Information Processing; Translation
Pathway map
apm00970  Aminoacyl-tRNA biosynthesis
apm00970

Organism
Alpha proteobacterium HIMB5 [GN:apm]
Gene
HIMB5_00011360  tRNA-Ala [KO:K14218]
HIMB5_00005990  tRNA-Arg [KO:K14219]
HIMB5_00010490  tRNA-Arg [KO:K14219]
HIMB5_00012870  tRNA-Arg [KO:K14219]
HIMB5_00006050  tRNA-Asn [KO:K14220]
HIMB5_00005400  tRNA-Asp [KO:K14221]
HIMB5_00006060  tRNA-Cys [KO:K14222]
HIMB5_00001470  tRNA-Gln [KO:K14223]
HIMB5_00006700  tRNA-Glu [KO:K14224]
HIMB5_00007850  tRNA-Gly [KO:K14225]
HIMB5_00013950  tRNA-Gly [KO:K14225]
HIMB5_00012260  tRNA-His [KO:K14226]
HIMB5_00011370  tRNA-Ile [KO:K14227]
HIMB5_00007900  tRNA-Leu [KO:K14228]
HIMB5_00005340  tRNA-Leu [KO:K14228]
HIMB5_00010330  tRNA-Leu [KO:K14228]
HIMB5_00012940  tRNA-Leu [KO:K14228]
HIMB5_00006460  tRNA-Lys [KO:K14229]
HIMB5_00001840  tRNA-Met [KO:K14230]
HIMB5_00004060  tRNA-Met [KO:K14230]
HIMB5_00010800  tRNA-Met [KO:K14230]
HIMB5_00012280  tRNA-Phe [KO:K14231]
HIMB5_00006650  tRNA-Pro [KO:K14232]
HIMB5_00006510  tRNA-Ser [KO:K14233]
HIMB5_00007210  tRNA-Ser [KO:K14233]
HIMB5_00012610  tRNA-Ser [KO:K14233]
HIMB5_00007880  tRNA-Thr [KO:K14234]
HIMB5_00012360  tRNA-Thr [KO:K14234]
HIMB5_00007830  tRNA-Trp [KO:K14235]
HIMB5_00007860  tRNA-Tyr [KO:K14236]
HIMB5_00001820  tRNA-Val [KO:K14237]
HIMB5_00005390  tRNA-Val [KO:K14237]
HIMB5_00005770  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
HIMB5_00007330  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit [KO:K02433] [EC:6.3.5.6 6.3.5.7]
HIMB5_00007320  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit [KO:K02434] [EC:6.3.5.6 6.3.5.7]
HIMB5_00007340  glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit [KO:K02435] [EC:6.3.5.6 6.3.5.7]
HIMB5_00002340  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
HIMB5_00003050  aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
HIMB5_00010380  glycine--tRNA ligase alpha chain [KO:K01878] [EC:6.1.1.14]
HIMB5_00010370  glycine--tRNA ligase beta chain [KO:K01879] [EC:6.1.1.14]
HIMB5_00012770  threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
HIMB5_00006350  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
HIMB5_00008060  cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
HIMB5_00006590  methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
HIMB5_00012490  methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
HIMB5_00006070  valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
HIMB5_00013600  tRNA synthetase class I family protein [KO:K01869] [EC:6.1.1.4]
HIMB5_00013610  tRNA synthetase class I family protein,anticodon-binding family protein [KO:K01869] [EC:6.1.1.4]
HIMB5_00000960  isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
HIMB5_00000470  lysine--tRNA ligase, class I [KO:K04566] [EC:6.1.1.6]
HIMB5_00006270  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
HIMB5_00005590  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
HIMB5_00012250  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
HIMB5_00012730  phenylalanine--tRNA ligase, alpha subunit [KO:K01889] [EC:6.1.1.20]
HIMB5_00012720  phenylalanine--tRNA ligase, beta subunit [KO:K01890] [EC:6.1.1.20]
HIMB5_00003180  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
HIMB5_00013410  tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
apm00250  Alanine, aspartate and glutamate metabolism
apm00260  Glycine, serine and threonine metabolism
apm00270  Cysteine and methionine metabolism
apm00290  Valine, leucine and isoleucine biosynthesis
apm00300  Lysine biosynthesis
apm00330  Arginine and proline metabolism
apm00340  Histidine metabolism
apm00380  Tryptophan metabolism
apm00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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