KEGG   PATHWAY: bdg00630
Entry
bdg00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium daqingense
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdg00630  Glyoxylate and dicarboxylate metabolism
bdg00630

Module
bdg_M00012  Glyoxylate cycle [PATH:bdg00630]
bdg_M00621  Glycine cleavage system [PATH:bdg00630]
bdg_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bdg00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium daqingense [GN:bdg]
Gene
LPJ38_33630  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LPJ38_21905  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
LPJ38_04675  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LPJ38_11160  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
LPJ38_00210  malate synthase G [KO:K01638] [EC:2.3.3.9]
LPJ38_05280  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPJ38_25915  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LPJ38_06320  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LPJ38_06325  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
LPJ38_05220  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LPJ38_17700  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_19965  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_19985  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_21735  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_21860  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_28275  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
LPJ38_32700  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_00555  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_01425  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_33770  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_06110  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_09415  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
LPJ38_11005  thiolase family protein [KO:K00626] [EC:2.3.1.9]
LPJ38_19865  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LPJ38_06115  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
LPJ38_20360  MaoC family dehydratase N-terminal domain-containing protein [KO:K17865] [EC:4.2.1.55]
LPJ38_26225  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
LPJ38_11055  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
LPJ38_27990  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
LPJ38_28360  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
LPJ38_18250  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LPJ38_18260  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
LPJ38_10265  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
LPJ38_10270  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
LPJ38_10275  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
LPJ38_06605  catalase [KO:K03781] [EC:1.11.1.6]
LPJ38_12820  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
LPJ38_03670  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
LPJ38_11920  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LPJ38_20985  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
LPJ38_25380  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LPJ38_27695  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LPJ38_36395  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
LPJ38_05055  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
LPJ38_15700  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
LPJ38_15705  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
LPJ38_32100  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LPJ38_32105  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LPJ38_05675  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LPJ38_22890  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
LPJ38_26580  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LPJ38_02160  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
LPJ38_35680  hypothetical protein [KO:K01915] [EC:6.3.1.2]
LPJ38_27210  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LPJ38_30920  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
LPJ38_30910  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
LPJ38_19845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPJ38_25700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPJ38_05315  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPJ38_30915  gcvH; glycine cleavage system protein GcvH [KO:K02437]
LPJ38_18775  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
LPJ38_18780  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
LPJ38_18785  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
LPJ38_00615  glycerate kinase [KO:K11529] [EC:2.7.1.165]
LPJ38_14550  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LPJ38_17605  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LPJ38_21730  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LPJ38_19625  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LPJ38_34635  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LPJ38_34640  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
LPJ38_19630  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
LPJ38_19635  formate dehydrogenase subunit gamma [KO:K00127]
LPJ38_22825  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
LPJ38_31785  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LPJ38_32540  formamidase [KO:K01455] [EC:3.5.1.49]
LPJ38_02670  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
LPJ38_18730  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bdg00010  Glycolysis / Gluconeogenesis
bdg00020  Citrate cycle (TCA cycle)
bdg00030  Pentose phosphate pathway
bdg00053  Ascorbate and aldarate metabolism
bdg00071  Fatty acid degradation
bdg00230  Purine metabolism
bdg00250  Alanine, aspartate and glutamate metabolism
bdg00260  Glycine, serine and threonine metabolism
bdg00620  Pyruvate metabolism
bdg00710  Carbon fixation in photosynthetic organisms
bdg00750  Vitamin B6 metabolism
bdg00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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