KEGG   PATHWAY: bdr04144
Entry
bdr04144                    Pathway                                
Name
Endocytosis - Bactrocera dorsalis (oriental fruit fly)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
bdr04144  Endocytosis
bdr04144

Other DBs
GO: 0006897
Organism
Bactrocera dorsalis (oriental fruit fly) [GN:bdr]
Gene
105230129  ADP-ribosylation factor 6 [KO:K07941]
105225374  phosphatidylinositol 4-phosphate 5-kinase type-1 alpha [KO:K00889] [EC:2.7.1.68]
105225446  phosphatidylinositol 4-phosphate 5-kinase type-1 alpha [KO:K00889] [EC:2.7.1.68]
105224919  phosphatidylinositol 5-phosphate 4-kinase type-2 alpha isoform X1 [KO:K00889] [EC:2.7.1.68]
105230153  phospholipase D2 isoform X1 [KO:K01115] [EC:3.1.4.4]
105232069  dynamin isoform X2 [KO:K01528] [EC:3.6.5.5]
105232075  clathrin heavy chain [KO:K04646]
105223574  AP-2 complex subunit alpha [KO:K11824]
105222812  AP-2 complex subunit mu [KO:K11826]
105223127  AP-2 complex subunit sigma [KO:K11827]
105224558  TGF-beta receptor type-1 isoform X1 [KO:K04674] [EC:2.7.11.30]
105222840  zinc finger FYVE domain-containing protein 9 [KO:K04679]
105232021  mothers against decapentaplegic homolog 3 [KO:K23605]
105222837  epidermal growth factor receptor isoform X1 [KO:K04361] [EC:2.7.10.1]
105223991  fibroblast growth factor receptor homolog 1 [KO:K05093] [EC:2.7.10.1]
105230971  insulin-like receptor [KO:K05087] [EC:2.7.10.1]
125780293  E3 ubiquitin-protein ligase CBL-B-B-like [KO:K04707] [EC:2.3.2.27]
105226325  endophilin-A [KO:K11247]
105228435  endophilin-B1 isoform X1 [KO:K11248]
105222890  myc box-dependent-interacting protein 1 isoform X1 [KO:K12562]
105232675  epsin-1 isoform X1 [KO:K12471]
105225470  epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472]
105228521  protein spartin [KO:K19366]
105226493  E3 ubiquitin-protein ligase Nedd-4 isoform X1 [KO:K10591] [EC:2.3.2.26]
105232033  TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
105225931  E3 ubiquitin-protein ligase NRDP1 [KO:K11981] [EC:2.3.2.27]
105228176  E3 ubiquitin-protein ligase Smurf1 [KO:K04678] [EC:2.3.2.26]
105230772  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
105223426  protein disabled isoform X1 [KO:K12475]
105226853  G protein-coupled receptor kinase 1 [KO:K00910] [EC:2.7.11.15]
105227021  beta-arrestin-1 [KO:K04439]
105233791  neural Wiskott-Aldrich syndrome protein isoform X1 [KO:K23612]
105229789  actin-related protein 2 isoform X1 [KO:K17260]
105233429  actin-related protein 3 [KO:K18584]
105223730  actin-related protein 2/3 complex subunit 1A-B [KO:K05757]
105222053  actin-related protein 2/3 complex subunit 2 [KO:K05758]
105225982  actin-related protein 2/3 complex subunit 3 isoform X1 [KO:K05756]
105222038  actin-related protein 2/3 complex subunit 4 [KO:K05755]
105232526  actin-related protein 2/3 complex subunit 5-C [KO:K05754]
105231830  heat shock 70 kDa protein cognate 2 [KO:K03283]
105224006  heat shock 70 kDa protein cognate 1 [KO:K03283]
105233698  heat shock protein 68 [KO:K03283]
125775801  heat shock protein 70-like [KO:K03283]
125775802  heat shock protein 70-like [KO:K03283]
125775803  heat shock protein 70-like [KO:K03283]
125775804  heat shock protein 70 [KO:K03283]
125775805  heat shock protein 70-like [KO:K03283]
125775806  heat shock protein 70-like [KO:K03283]
125776475  heat shock protein 68-like [KO:K03283]
125775287  heat shock protein 68-like isoform X1 [KO:K03283]
105229596  heat shock 70 kDa protein cognate 4 [KO:K03283]
105230421  heat shock protein 68 [KO:K03283]
105224230  WASH complex subunit 4 [KO:K18465]
105229050  WASH complex subunit homolog 5 [KO:K18464]
105222336  WASH complex subunit 1 [KO:K18461]
105228723  WASH complex subunit 3 [KO:K18463]
105230630  F-actin-capping protein subunit alpha [KO:K10364]
105227798  F-actin-capping protein subunit beta isoform X1 [KO:K10365]
105229329  vacuolar protein sorting-associated protein 29 [KO:K18467]
105232020  vacuolar protein sorting-associated protein 26 [KO:K18466]
105224571  vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468]
105225739  sorting nexin-12 [KO:K17918]
105229627  ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
105231762  STAM-binding protein [KO:K11866] [EC:3.4.19.12]
105232575  Rab7; ras-related protein Rab-7a [KO:K07897]
105234137  hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
105224187  signal transducing adapter molecule 1 isoform X1 [KO:K04705]
105233711  tumor susceptibility gene 101 protein [KO:K12183]
105228575  uncharacterized protein LOC105228575 [KO:K12186]
105230581  vacuolar protein sorting-associated protein 28 homolog [KO:K12184]
105231573  vacuolar protein sorting-associated protein 37B [KO:K12185]
105223543  vacuolar protein sorting-associated protein 37A [KO:K12185]
105231724  vacuolar-sorting protein SNF8 [KO:K12188]
105224274  vacuolar protein-sorting-associated protein 36 [KO:K12190]
105226665  vacuolar protein-sorting-associated protein 25 [KO:K12189]
105222843  charged multivesicular body protein 6-A [KO:K12195]
105228916  charged multivesicular body protein 4c [KO:K12194]
105229865  charged multivesicular body protein 3 [KO:K12193]
105227100  charged multivesicular body protein 2a [KO:K12191]
105232905  charged multivesicular body protein 2b-B [KO:K12192]
105227903  charged multivesicular body protein 7 [KO:K15053]
105222856  vacuolar protein sorting-associated protein 4 [KO:K12196]
105224453  vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199]
105222532  charged multivesicular body protein 1b [KO:K12197]
105226459  charged multivesicular body protein 5 [KO:K12198]
105225619  IST1 homolog isoform X1 [KO:K19476]
105227574  programmed cell death 6-interacting protein [KO:K12200]
125776600  cation-independent mannose-6-phosphate receptor-like [KO:K06564]
105222101  cation-independent mannose-6-phosphate receptor [KO:K06564]
105232381  sorting nexin-2 [KO:K17917]
105230733  sorting nexin-6 isoform X3 [KO:K17920]
105233513  tyrosine-protein kinase Src64B [KO:K05704] [EC:2.7.10.2]
105230670  ras-like GTP-binding protein Rho1 [KO:K04513]
105231229  Rab5b; RAB5B, member RAS oncogene family [KO:K07889]
105228450  rab GTPase-binding effector protein 1 [KO:K12480]
125778433  rabenosyn-5 [KO:K12481]
105229828  protein RUFY3 isoform X1 [KO:K12482]
105226326  EH domain-containing protein 3 isoform X1 [KO:K12483]
105231554  vacuolar protein sorting-associated protein 45 [KO:K12479]
105222756  ras-related protein Rab-10 [KO:K07903]
105225600  ras-related protein Rab-8A [KO:K07901]
105226114  Rab35; RAB35, member RAS oncogene family [KO:K07876]
105230922  ras-related protein Rab-11A [KO:K07904]
105233528  rab11 family-interacting protein 1 isoform X1 [KO:K12484]
105222117  kinesin heavy chain [KO:K10396]
105224032  rab11 family-interacting protein 3 isoform X1 [KO:K12485]
105222503  partitioning defective 3 homolog isoform X1 [KO:K04237]
105223178  partitioning defective protein 6 [KO:K06093]
105228480  uncharacterized protein LOC105228480 isoform X1 [KO:K06069] [EC:2.7.11.13]
105231990  cdc42 homolog [KO:K04393]
105222680  stromal membrane-associated protein 1 [KO:K12486]
105228892  ARF GTPase-activating protein Git [KO:K12487]
105229989  arfGAP with SH3 domain, ANK repeat and PH domain-containing protein isoform X1 [KO:K12488]
105231005  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489]
105232275  centaurin-gamma-1A isoform X1 [KO:K12491]
105231358  ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492]
105227216  ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493]
105226019  PH and SEC7 domain-containing protein isoform X4 [KO:K12494]
105233242  uncharacterized protein LOC105233242 isoform X1 [KO:K12495]
105228485  cytohesin-1 [KO:K18441]
105222246  brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442]
105233821  Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 [KO:K18443]
105232002  ADP-ribosylation factor 4 [KO:K07937]
105225248  ADP-ribosylation factor 1 [KO:K07937]
109579952  uncharacterized protein LOC109579952 [KO:K07937]
105227425  ADP-ribosylation factor 2 [KO:K07939]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
bdr04070  Phosphatidylinositol signaling system
bdr04130  SNARE interactions in vesicular transport
bdr04142  Lysosome
bdr04350  TGF-beta signaling pathway
KO pathway
ko04144   
LinkDB

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