KEGG   PATHWAY: bic00630
Entry
bic00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium icense
Class
Metabolism; Carbohydrate metabolism
Pathway map
bic00630  Glyoxylate and dicarboxylate metabolism
bic00630

Module
bic_M00012  Glyoxylate cycle [PATH:bic00630]
bic_M00621  Glycine cleavage system [PATH:bic00630]
bic_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bic00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium icense [GN:bic]
Gene
LMTR13_07145  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
LMTR13_05140  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LMTR13_04675  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
LMTR13_38320  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
LMTR13_23310  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
LMTR13_03570  malate synthase G [KO:K01638] [EC:2.3.3.9]
LMTR13_37670  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LMTR13_19065  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LMTR13_37720  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LMTR13_01520  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_08265  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_17145  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_10130  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_28620  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_13870  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_35655  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_30180  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_30190  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_30555  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_31915  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_23430  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_36080  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_25490  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
LMTR13_01525  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
LMTR13_13875  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
LMTR13_33515  phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
LMTR13_18815  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
LMTR13_17360  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
LMTR13_16985  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
LMTR13_24375  biotin carboxylase [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
LMTR13_11580  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LMTR13_11570  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
LMTR13_26000  methylaspartate ammonia-lyase [KO:K04835] [EC:4.3.1.2]
LMTR13_33480  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
LMTR13_33475  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
LMTR13_33470  2-hydroxy-acid oxidase [KO:K11473] [EC:1.1.99.14]
LMTR13_20420  catalase [KO:K03781] [EC:1.11.1.6]
LMTR13_00710  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
LMTR13_03965  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LMTR13_13175  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LMTR13_13990  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
LMTR13_07600  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LMTR13_14635  phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
LMTR13_22970  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
LMTR13_06345  ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
LMTR13_06350  ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
LMTR13_10590  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LMTR13_10595  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LMTR13_37310  aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
LMTR13_18620  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LMTR13_19085  type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
LMTR13_22080  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LMTR13_36395  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
LMTR13_18315  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
LMTR13_15295  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
LMTR13_15305  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
LMTR13_37635  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMTR13_08165  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMTR13_13855  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMTR13_19300  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMTR13_15300  glycine cleavage system protein H [KO:K02437]
LMTR13_13130  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
LMTR13_13135  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
LMTR13_13140  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
LMTR13_35460  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
LMTR13_28725  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LMTR13_13980  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LMTR13_19375  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
LMTR13_23435  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LMTR13_06560  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
LMTR13_12765  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
LMTR13_13260  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
LMTR13_06555  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
LMTR13_13265  formate dehydrogenase [KO:K00124]
LMTR13_12775  formate dehydrogenase subunit gamma [KO:K00127]
LMTR13_13270  formate dehydrogenase subunit gamma [KO:K00127]
LMTR13_29975  esterase [KO:K01432] [EC:3.5.1.9]
LMTR13_29935  esterase [KO:K01432] [EC:3.5.1.9]
LMTR13_10960  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LMTR13_25920  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
LMTR13_29120  formamidase [KO:K01455] [EC:3.5.1.49]
LMTR13_13090  oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bic00010  Glycolysis / Gluconeogenesis
bic00020  Citrate cycle (TCA cycle)
bic00030  Pentose phosphate pathway
bic00053  Ascorbate and aldarate metabolism
bic00071  Fatty acid degradation
bic00230  Purine metabolism
bic00250  Alanine, aspartate and glutamate metabolism
bic00260  Glycine, serine and threonine metabolism
bic00620  Pyruvate metabolism
bic00710  Carbon fixation by Calvin cycle
bic00750  Vitamin B6 metabolism
bic00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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