Entry
Name
Autophagy - animal - Balearica regulorum gibbericeps (East African grey crowned-crane)
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Balearica regulorum gibbericeps (East African grey crowned-crane) [GN:
breg ]
Gene
104636125 PIK3CD; LOW QUALITY PROTEIN: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922 ] [EC:2.7.1.153 ]
104636734 PIK3CA; LOW QUALITY PROTEIN: phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
104637393 PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922 ] [EC:2.7.1.153 ]
104641031 PIK3R3; phosphatidylinositol 3-kinase regulatory subunit gamma [KO:K02649 ]
104634362 LOW QUALITY PROTEIN: phosphatidylinositol 3-kinase regulatory subunit beta-like [KO:K02649 ]
104634486 PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
104643797 phosphatidylinositol 3-kinase regulatory subunit alpha-like [KO:K02649 ]
104631553 HIF1A; LOW QUALITY PROTEIN: hypoxia-inducible factor 1-alpha [KO:K08268 ]
104642660 BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464 ]
104633273 IGBP1; LOW QUALITY PROTEIN: immunoglobulin-binding protein 1 [KO:K17606 ]
104637901 WIPI1; WD repeat domain phosphoinositide-interacting protein 1 [KO:K17908 ]
104634696 WIPI2; WD repeat domain phosphoinositide-interacting protein 2 [KO:K17908 ]
104630247 WDR45B; WD repeat domain phosphoinositide-interacting protein 3 [KO:K22991 ]
104634295 LOW QUALITY PROTEIN: autophagy-related protein 9A-like [KO:K17907 ]
104644053 SUPT20H; transcription factor SPT20 homolog isoform X1 [KO:K21245 ]
104641210 SMCR8; LOW QUALITY PROTEIN: smith-Magenis syndrome chromosomal region candidate gene 8 protein [KO:K23611 ]
104640494 LOW QUALITY PROTEIN: ras-related protein Rab-39B-like [KO:K07925 ]
104635615 TANK; TRAF family member-associated NF-kappa-B activator isoform X1 [KO:K12650 ]
104642100 ATG14; beclin 1-associated autophagy-related key regulator [KO:K17889 ]
104639568 LOW QUALITY PROTEIN: activating molecule in BECN1-regulated autophagy protein 1-like [KO:K17985 ]
104640105 KIAA0226; run domain Beclin-1 interacting and cysteine-rich containing protein [KO:K19330 ]
104641810 LOW QUALITY PROTEIN: serine/threonine-protein kinase/endoribonuclease IRE1-like [KO:K08852 ] [EC:2.7.11.1 3.1.26.-]
104638708 LOW QUALITY PROTEIN: serine/threonine-protein kinase/endoribonuclease IRE1-like [KO:K08852 ] [EC:2.7.11.1 3.1.26.-]
104638777 EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237 ]
104633854 ZFYVE1; zinc finger FYVE domain-containing protein 1 isoform X1 [KO:K17603 ]
104634077 CFLAR; CASP8 and FADD-like apoptosis regulator isoform X1 [KO:K04724 ]
104640890 gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341 ]
104643066 GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
104642569 microtubule-associated proteins 1A/1B light chain 3C-like [KO:K10435 ]
104638472 MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435 ]
104638792 LOW QUALITY PROTEIN: microtubule-associated proteins 1A/1B light chain 3A-like [KO:K10435 ]
104633974 CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 [KO:K21348 ]
104632206 WDFY3; LOW QUALITY PROTEIN: WD repeat and FYVE domain-containing protein 3 [KO:K22262 ]
104639099 PLEKHM1; LOW QUALITY PROTEIN: pleckstrin homology domain-containing family M member 1 [KO:K23282 ]
104633934 VPS11; vacuolar protein sorting-associated protein 11 homolog [KO:K20179 ]
104640948 VPS18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
104641160 VPS33A; vacuolar protein sorting-associated protein 33A [KO:K20182 ]
Compound
C00350 Phosphatidylethanolamine
C01194 1-Phosphatidyl-D-myo-inositol
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Meijer AJ, Codogno P.
Title
Regulation and role of autophagy in mammalian cells.
Journal
Reference
Authors
Deretic V.
Title
Autophagy in innate and adaptive immunity.
Journal
Reference
Authors
Levine B, Yuan J.
Title
Autophagy in cell death: an innocent convict?
Journal
Reference
Authors
Tanida I, Ueno T, Kominami E.
Title
LC3 conjugation system in mammalian autophagy.
Journal
Reference
Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
Title
Autophagy in metazoans: cell survival in the land of plenty.
Journal
Reference
Authors
Reggiori F, Klionsky DJ.
Title
Autophagosomes: biogenesis from scratch?
Journal
Reference
Authors
Klionsky DJ, Emr SD.
Title
Autophagy as a regulated pathway of cellular degradation.
Journal
Reference
Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
Title
Lysosomal proteolysis in skeletal muscle.
Journal
Reference
Authors
He C, Klionsky DJ
Title
Regulation mechanisms and signaling pathways of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
An overview of the molecular mechanism of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
Mammalian autophagy: core molecular machinery and signaling regulation.
Journal
Reference
Authors
Chen Y, Klionsky DJ
Title
The regulation of autophagy - unanswered questions.
Journal
Reference
Authors
Mizushima N, Yoshimori T, Ohsumi Y
Title
The role of Atg proteins in autophagosome formation.
Journal
Reference
Authors
Russell RC, Yuan HX, Guan KL
Title
Autophagy regulation by nutrient signaling.
Journal
Reference
Authors
Noda NN, Fujioka Y
Title
Atg1 family kinases in autophagy initiation.
Journal
Related pathway
breg04141 Protein processing in endoplasmic reticulum
KO pathway
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