KEGG   PATHWAY: cfir00630
Entry
cfir00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Cytobacillus firmus
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfir00630  Glyoxylate and dicarboxylate metabolism
cfir00630

Module
cfir_M00012  Glyoxylate cycle [PATH:cfir00630]
cfir_M00621  Glycine cleavage system [PATH:cfir00630]
Other DBs
GO: 0046487 0043648
Organism
Cytobacillus firmus [GN:cfir]
Gene
NAF01_01905  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
NAF01_20125  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
NAF01_20195  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
NAF01_15995  malate synthase G [KO:K01638] [EC:2.3.3.9]
NAF01_12655  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NAF01_19925  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NAF01_19935  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
NAF01_10925  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NAF01_06870  thiolase family protein [KO:K00626] [EC:2.3.1.9]
NAF01_13240  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
NAF01_23080  thiolase family protein [KO:K00626] [EC:2.3.1.9]
NAF01_24030  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NAF01_18015  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
NAF01_03485  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
NAF01_19920  MaoC family dehydratase N-terminal domain-containing protein [KO:K17865] [EC:4.2.1.55]
NAF01_18130  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
NAF01_18125  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
NAF01_18175  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
NAF01_18180  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
NAF01_04515  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
NAF01_07775  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
NAF01_12630  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
NAF01_16000  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
NAF01_16010  FAD-binding oxidoreductase [KO:K11472] [EC:1.1.99.14]
NAF01_04520  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
NAF01_07770  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
NAF01_12625  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
NAF01_16005  (Fe-S)-binding protein [KO:K11473] [EC:1.1.99.14]
NAF01_04640  catalase [KO:K03781] [EC:1.11.1.6]
NAF01_10165  catalase [KO:K03781] [EC:1.11.1.6]
NAF01_10870  katA; catalase KatA [KO:K03781] [EC:1.11.1.6]
NAF01_21410  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
NAF01_09710  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
NAF01_23860  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NAF01_18415  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
NAF01_18410  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
NAF01_18420  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NAF01_08320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAF01_10830  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAF01_18200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAF01_23180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NAF01_21605  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NAF01_10360  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
NAF01_12495  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NAF01_03065  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NAF01_23055  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
NAF01_02060  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NAF01_22320  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
NAF01_12845  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
NAF01_16050  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
NAF01_04275  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
NAF01_02190  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
NAF01_14535  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
cfir00010  Glycolysis / Gluconeogenesis
cfir00020  Citrate cycle (TCA cycle)
cfir00030  Pentose phosphate pathway
cfir00053  Ascorbate and aldarate metabolism
cfir00071  Fatty acid degradation
cfir00230  Purine metabolism
cfir00250  Alanine, aspartate and glutamate metabolism
cfir00260  Glycine, serine and threonine metabolism
cfir00620  Pyruvate metabolism
cfir00750  Vitamin B6 metabolism
cfir00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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