KEGG   PATHWAY: ehs04120
Entry
ehs04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Eurypyga helias (sunbittern)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ehs04120  Ubiquitin mediated proteolysis
ehs04120

Other DBs
GO: 0016567
Organism
Eurypyga helias (sunbittern) [GN:ehs]
Gene
104503935  RPS27A; LOW QUALITY PROTEIN: ubiquitin-40S ribosomal protein S27a [KO:K02977]
104502604  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
104503372  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
104513657  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
104510854  ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
104504424  ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
104508607  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
104504459  ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
104510858  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
104504534  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
104506781  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
104507671  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
104504651  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
104504920  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
104503510  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
104504351  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
104506324  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
104510449  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
104513961  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
104504965  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
104511730  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
104509551  UBE2O; LOW QUALITY PROTEIN: E2/E3 hybrid ubiquitin-protein ligase UBE2O [KO:K10581] [EC:2.3.2.24]
104506283  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
104504750  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
104513225  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
104510621  UBE2W; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
104507596  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
104507488  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
104510010  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
104510675  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
104503210  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
104512527  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
104508319  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
104505890  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
104514548  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
104514356  NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
104512764  TRIP12; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
104503011  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
104515277  E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
104509379  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
104502956  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
104502679  probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
104512441  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
104512301  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
104511186  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
104513088  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
104508623  UBOX5; RING finger protein 37 [KO:K10600]
104515219  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
104507582  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
104506930  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
104505401  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
104502487  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
104506271  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
104515922  E3 ubiquitin-protein ligase RFWD2-like [KO:K10143] [EC:2.3.2.27]
104516201  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
104516561  inhibitor of apoptosis protein-like [KO:K16060]
104515627  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
104507987  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
104511964  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
104502545  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
104517199  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
104513407  BRCA1; LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
104503242  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
104510025  E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
104514975  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
104502780  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
104509276  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
104513568  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
104516997  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
104503068  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
104506625  F-box/WD repeat-containing protein 7-like [KO:K10260]
104516908  FBXO2; F-box only protein 2 [KO:K10099]
104502690  FBXO4; F-box only protein 4 [KO:K10291]
104517022  CUL2; cullin-2 [KO:K03870]
104506447  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
104516416  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
104504933  von Hippel-Lindau disease tumor suppressor-like [KO:K03871]
104512368  cullin-3 [KO:K03869]
104514333  kelch-like protein 13 [KO:K10447]
104506715  KLHL13; kelch-like protein 13 [KO:K10447]
104513606  RHOBTB2; LOW QUALITY PROTEIN: rho-related BTB domain-containing protein 2 [KO:K07868]
104502927  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
104517283  CUL4A; LOW QUALITY PROTEIN: cullin-4A [KO:K10609]
104509752  CUL4B; cullin-4B [KO:K10609]
104509593  DNA damage-binding protein 1-like [KO:K10610]
104509419  DDB2; DNA damage-binding protein 2 [KO:K10140]
104506471  DET1; DET1 homolog isoform X1 [KO:K10571]
104505007  RNF7; RING-box protein 2 [KO:K10611]
104510014  CUL5; cullin-5 [KO:K10612]
104513620  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
104502613  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
104502862  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
104513671  CDC20; cell division cycle protein 20 homolog [KO:K03363]
104508191  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
104510468  LOW QUALITY PROTEIN: anaphase-promoting complex subunit 1-like [KO:K03348]
104507032  CDC27; LOW QUALITY PROTEIN: cell division cycle protein 27 homolog [KO:K03350]
104503100  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
104515174  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
104517201  CDC16; cell division cycle protein 16 homolog [KO:K03353]
104512350  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
104509676  CDC23; cell division cycle protein 23 homolog [KO:K03355]
104509498  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
104510647  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
104512471  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ehs03050  Proteasome
KO pathway
ko04120   
LinkDB

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