KEGG   PATHWAY: elf00020
Entry
elf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli LF82
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elf00020  Citrate cycle (TCA cycle)
elf00020

Module
elf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elf00020]
elf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elf00020]
elf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elf00020]
elf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elf00020]
elf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elf00020]
Other DBs
GO: 0006099
Organism
Escherichia coli LF82 [GN:elf]
Gene
LF82_0875  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
LF82_0018  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
LF82_2626  ybhJ; Uncharacterized protein ybhJ [KO:K01681] [EC:4.2.1.3]
LF82_0019  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LF82_1086  icd; Isocitrate dehydrogenase [NadP] [KO:K00031] [EC:1.1.1.42]
LF82_640  2-oxoglutarate dehydrogenase E1component (EC1 2 4 2) [KO:K00164] [EC:1.2.4.2]
LF82_2195  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LF82_641  Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC 23161) [KO:K00658] [EC:2.3.1.61]
LF82_2196  sucB; Dihydrolipoyllysine-residue succinyltransferase component [KO:K00658] [EC:2.3.1.61]
LF82_642  Subunit of 2-oxoglutarate dehydrogenase (EC124 2) [KO:K00382] [EC:1.8.1.4]
LF82_1218  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LF82_644  SucD, succinyl-CoA synthetase alpha chain (EC62 15) [KO:K01902] [EC:6.2.1.5]
LF82_2198  sucD; Succinyl-CoA ligase [adP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LF82_643  SucC, succinyl-CoA synthetase beta chain (EC62 15) [KO:K01903] [EC:6.2.1.5]
LF82_2197  sucC; Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
LF82_2097  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LF82_2098  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LF82_2099  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
LF82_2100  sdhD; Succinate dehydrogenase hydrophobic membrane anchor [KO:K00242]
LF82_0732  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
LF82_0733  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
LF82_0734  frdC; Fumarate reductase subunit C [KO:K00246]
LF82_0735  frdD; Fumarate reductase subunit D [KO:K00247]
LF82_0776  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
LF82_0777  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
LF82_0778  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LF82_2868  ydhZ; Uncharacterized protein ydhZ [KO:K01675] [EC:4.2.1.2]
LF82_3183  yggD; Uncharacterized protein yggD [KO:K01774] [EC:4.2.1.2]
LF82_1284  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LF82_1386  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LF82_1601  pck; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
LF82_0014  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LF82_0015  aceF; Dihydrolipoyllysine-residue acetyltransferase component [KO:K00627] [EC:2.3.1.12]
LF82_2789  ydbK; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elf00010  Glycolysis / Gluconeogenesis
elf00053  Ascorbate and aldarate metabolism
elf00061  Fatty acid biosynthesis
elf00071  Fatty acid degradation
elf00190  Oxidative phosphorylation
elf00220  Arginine biosynthesis
elf00250  Alanine, aspartate and glutamate metabolism
elf00280  Valine, leucine and isoleucine degradation
elf00350  Tyrosine metabolism
elf00470  D-Amino acid metabolism
elf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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