KEGG   PATHWAY: hhb03430
Entry
hhb03430                    Pathway                                
Name
Mismatch repair - Halobacterium hubeiense
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
hhb03430  Mismatch repair
hhb03430

Other DBs
GO: 0006298
Organism
Halobacterium hubeiense [GN:hhb]
Gene
Hhub_1344  mutS1b; DNA mismatch repair protein MutS [KO:K03555]
Hhub_1352  mutS1a; DNA mismatch repair protein MutS [KO:K03555]
Hhub_1355  mutS5b; DNA mismatch repair protein MutS [KO:K07456]
Hhub_3673  mutS5a; DNA mismatch repair protein MutS [KO:K07456]
Hhub_1343  mutL; DNA mismatch repair protein MutL [KO:K03572]
Hhub_1139  uvrD; repair helicase UvrD [KO:K03657] [EC:5.6.2.4]
Hhub_5021  xseA1; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Hhub_3553  recJ1; single-stranded-DNA-specific exonuclease RecJ1 [KO:K07462] [EC:3.1.-.-]
Hhub_3665  ligA; DNA ligase (NAD) [KO:K01972] [EC:6.5.1.2]
Hhub_3666  pcn; DNA polymerase sliding clamp [KO:K04802]
Hhub_1322  rpa2; replication protein A [KO:K07466]
Hhub_2028  ligB; DNA ligase (ATP) [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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