KEGG   PATHWAY: hrm00030
Entry
hrm00030                    Pathway                                
Name
Pentose phosphate pathway - Halobaculum rubrum
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hrm00030  Pentose phosphate pathway
hrm00030

Module
hrm_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:hrm00030]
hrm_M00308  Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P [PATH:hrm00030]
hrm_M00968  Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH:hrm00030]
Other DBs
GO: 0006098
Organism
Halobaculum rubrum [GN:hrm]
Gene
K6T25_08455  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
K6T25_03630  NAD(P)-dependent oxidoreductase [KO:K19243] [EC:1.1.1.388]
K6T25_07560  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K6T25_06240  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
K6T25_02860  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
K6T25_10295  phosphomannomutase [KO:K22199] [EC:5.4.2.7]
K6T25_06860  glmM; phosphoglucosamine mutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
K6T25_00080  carbohydrate kinase family protein [KO:K26208] [EC:2.7.1.239]
K6T25_00075  ribose 1,5-bisphosphate isomerase [KO:K18237] [EC:5.3.1.29]
K6T25_05845  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
K6T25_09795  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K6T25_00770  glucose 1-dehydrogenase [KO:K22969] [EC:1.1.1.47]
K6T25_13690  GMC family oxidoreductase [KO:K19813] [EC:1.1.5.9]
K6T25_11995  mandelate racemase/muconate lactonizing enzyme family protein [KO:K05308] [EC:4.2.1.140]
K6T25_03330  sugar kinase [KO:K00874] [EC:2.7.1.45]
K6T25_06855  aldehyde ferredoxin oxidoreductase [KO:K03738] [EC:1.2.7.5]
K6T25_08715  aldehyde ferredoxin oxidoreductase [KO:K03738] [EC:1.2.7.5]
K6T25_08880  aldehyde ferredoxin oxidoreductase family protein [KO:K03738] [EC:1.2.7.5]
K6T25_14355  aldehyde ferredoxin oxidoreductase [KO:K03738] [EC:1.2.7.5]
K6T25_13095  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
K6T25_11910  aldolase [KO:K11645] [EC:4.1.2.13]
K6T25_02715  2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase [KO:K16306] [EC:4.1.2.13 2.2.1.10]
K6T25_11915  fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
hrm00010  Glycolysis / Gluconeogenesis
hrm00040  Pentose and glucuronate interconversions
hrm00052  Galactose metabolism
hrm00230  Purine metabolism
hrm00240  Pyrimidine metabolism
hrm00340  Histidine metabolism
hrm00630  Glyoxylate and dicarboxylate metabolism
hrm00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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