KEGG   PATHWAY: hum00970
Entry
hum00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Humibacter sp. BT305
Class
Genetic Information Processing; Translation
Pathway map
hum00970  Aminoacyl-tRNA biosynthesis
hum00970

Organism
Humibacter sp. BT305 [GN:hum]
Gene
DVJ78_15240  tRNA-Ala [KO:K14218]
DVJ78_02465  tRNA-Ala [KO:K14218]
DVJ78_13115  tRNA-Ala [KO:K14218]
DVJ78_10500  tRNA-Arg [KO:K14219]
DVJ78_05340  tRNA-Arg [KO:K14219]
DVJ78_15405  tRNA-Arg [KO:K14219]
DVJ78_14480  tRNA-Arg [KO:K14219]
DVJ78_10895  tRNA-Asn [KO:K14220]
DVJ78_16790  tRNA-Asp [KO:K14221]
DVJ78_11320  tRNA-Cys [KO:K14222]
DVJ78_08680  tRNA-Gln [KO:K14223]
DVJ78_14915  tRNA-Gln [KO:K14223]
DVJ78_16785  tRNA-Glu [KO:K14224]
DVJ78_08835  tRNA-Glu [KO:K14224]
DVJ78_14365  tRNA-Gly [KO:K14225]
DVJ78_11315  tRNA-Gly [KO:K14225]
DVJ78_02955  tRNA-Gly [KO:K14225]
DVJ78_14465  tRNA-His [KO:K14226]
DVJ78_02470  tRNA-Ile [KO:K14227]
DVJ78_10250  tRNA-Leu [KO:K14228]
DVJ78_11995  tRNA-Leu [KO:K14228]
DVJ78_02380  tRNA-Leu [KO:K14228]
DVJ78_09430  tRNA-Leu [KO:K14228]
DVJ78_11640  tRNA-Leu [KO:K14228]
DVJ78_15640  tRNA-Lys [KO:K14229]
DVJ78_08410  tRNA-Lys [KO:K14229]
DVJ78_10000  tRNA-Met [KO:K14230]
DVJ78_06525  tRNA-Met [KO:K14230]
DVJ78_10930  tRNA-Met [KO:K14230]
DVJ78_16795  tRNA-Phe [KO:K14231]
DVJ78_07520  tRNA-Pro [KO:K14232]
DVJ78_13825  tRNA-Pro [KO:K14232]
DVJ78_14360  tRNA-Pro [KO:K14232]
DVJ78_16525  tRNA-Ser [KO:K14233]
DVJ78_17775  tRNA-Ser [KO:K14233]
DVJ78_06935  tRNA-Ser [KO:K14233]
DVJ78_07600  tRNA-Thr [KO:K14234]
DVJ78_15510  tRNA-Thr [KO:K14234]
DVJ78_06520  tRNA-Thr [KO:K14234]
DVJ78_06605  tRNA-Trp [KO:K14235]
DVJ78_06500  tRNA-Tyr [KO:K14236]
DVJ78_11325  tRNA-Val [KO:K14237]
DVJ78_11005  tRNA-Val [KO:K14237]
DVJ78_11310  tRNA-Val [KO:K14237]
DVJ78_08635  glutamate--tRNA ligase [KO:K01885] [EC:6.1.1.17]
DVJ78_14615  Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
DVJ78_14610  Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
DVJ78_14620  Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
DVJ78_11435  alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
DVJ78_02965  hypothetical protein [KO:K01872] [EC:6.1.1.7]
DVJ78_06130  glycine--tRNA ligase [KO:K01880] [EC:6.1.1.14]
DVJ78_11340  threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
DVJ78_17825  serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
DVJ78_15535  cysteine--tRNA ligase [KO:K01883] [EC:6.1.1.16]
DVJ78_14960  methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
DVJ78_11545  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
DVJ78_14310  valS; valine--tRNA ligase [KO:K01873] [EC:6.1.1.9]
DVJ78_14240  leucine--tRNA ligase [KO:K01869] [EC:6.1.1.4]
DVJ78_13200  isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
DVJ78_16695  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
DVJ78_10510  arginine--tRNA ligase [KO:K01887] [EC:6.1.1.19]
DVJ78_10625  proline--tRNA ligase [KO:K01881] [EC:6.1.1.15]
DVJ78_09375  histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
DVJ78_13985  phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
DVJ78_13980  phenylalanine--tRNA ligase subunit beta [KO:K01890] [EC:6.1.1.20]
DVJ78_13940  tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
DVJ78_07620  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
hum00250  Alanine, aspartate and glutamate metabolism
hum00260  Glycine, serine and threonine metabolism
hum00270  Cysteine and methionine metabolism
hum00290  Valine, leucine and isoleucine biosynthesis
hum00300  Lysine biosynthesis
hum00330  Arginine and proline metabolism
hum00340  Histidine metabolism
hum00380  Tryptophan metabolism
hum00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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