KEGG   PATHWAY: mmed00630
Entry
mmed00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Martelella mediterranea
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmed00630  Glyoxylate and dicarboxylate metabolism
mmed00630

Module
mmed_M00012  Glyoxylate cycle [PATH:mmed00630]
mmed_M00621  Glycine cleavage system [PATH:mmed00630]
mmed_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:mmed00630]
Other DBs
GO: 0046487 0043648
Organism
Martelella mediterranea [GN:mmed]
Gene
Mame_01386  icl; Isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Mame_00502  acsA_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Mame_00734  acsA_2; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Mame_00954  glcB; Malate synthase G [KO:K01638] [EC:2.3.3.9]
Mame_02091  mdh_2; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Mame_04596  citA; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Mame_03168  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
Mame_04240  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Mame_03782  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Mame_00888  phbA_1; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Mame_00506  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Mame_00508  fadA_1; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
Mame_03031  phbA_2; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Mame_01580  fadA_2; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
Mame_01395  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
Mame_01397  accA1_2; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
Mame_01400  accD5; putative propionyl-CoA carboxylase beta chain 5 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Mame_01396  scpA_1; Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Mame_03891  putative FAD-linked oxidoreductase [KO:K00104] [EC:1.1.99.14]
Mame_03892  putative FAD-linked oxidoreductase [KO:K11472] [EC:1.1.99.14]
Mame_03894  lutA; Lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
Mame_01191  katA; Catalase A [KO:K03781] [EC:1.11.1.6]
Mame_00868  Glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
Mame_04620  ghrA_2; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Mame_01302  ghrA_1; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Mame_00574  Putative 2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
Mame_02768  ppaX; Pyrophosphatase PpaX [KO:K01091] [EC:3.1.3.18]
Mame_00102  gph_1; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Mame_02401  gph_2; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Mame_02553  glnA_1; putative glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
Mame_01242  puuA; Gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
Mame_02986  glnA_2; Glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
Mame_03609  glyA1; Serine hydroxymethyltransferase 1 [KO:K00600] [EC:2.1.2.1]
Mame_02945  gcvP; Glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Mame_02947  gcvT_1; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
Mame_02763  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mame_02098  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
Mame_04651  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mame_02946  gcvH; Glycine cleavage system H protein [KO:K02437]
Mame_04870  hyi_1; Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Mame_05140  hyi_2; Hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Mame_00559  glxR_1; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Mame_04871  glxR_3; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Mame_01394  glxR_2; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Mame_02237  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Mame_01743  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Mame_01320  NADH-dependent formate dehydrogenase delta subunit FdsD [KO:K00126] [EC:1.17.1.9]
Mame_01321  Putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
Mame_01322  hndC; NADP-reducing hydrogenase subunit HndC [KO:K00124]
Mame_01323  hndA; NADP-reducing hydrogenase subunit HndA [KO:K00127]
Mame_00665  nlhH_1; Carboxylesterase NlhH [KO:K01432] [EC:3.5.1.9]
Mame_04863  nlhH_5; Carboxylesterase NlhH [KO:K01432] [EC:3.5.1.9]
Mame_00069  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Mame_00490  fmdA_2; Formamidase [KO:K01455] [EC:3.5.1.49]
Mame_01254  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
mmed00010  Glycolysis / Gluconeogenesis
mmed00020  Citrate cycle (TCA cycle)
mmed00030  Pentose phosphate pathway
mmed00053  Ascorbate and aldarate metabolism
mmed00071  Fatty acid degradation
mmed00230  Purine metabolism
mmed00250  Alanine, aspartate and glutamate metabolism
mmed00260  Glycine, serine and threonine metabolism
mmed00620  Pyruvate metabolism
mmed00750  Vitamin B6 metabolism
mmed00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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