KEGG   PATHWAY: npn03430
Entry
npn03430                    Pathway                                
Name
Mismatch repair - Novosphingobium pentaromativorans
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
npn03430  Mismatch repair
npn03430

Other DBs
GO: 0006298
Organism
Novosphingobium pentaromativorans [GN:npn]
Gene
JI59_11055  DNA mismatch repair protein MutS [KO:K03555]
JI59_03965  DNA mismatch repair protein MutL [KO:K03572]
JI59_01410  DNA helicase II [KO:K03657] [EC:5.6.2.4]
JI59_11830  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
JI59_00545  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
JI59_00480  recombinase RecJ [KO:K07462] [EC:3.1.-.-]
JI59_18635  single-stranded DNA-binding protein [KO:K03111]
JI59_26395  single-stranded DNA-binding protein [KO:K03111]
JI59_24015  single-stranded DNA-binding protein [KO:K03111]
JI59_06150  single-stranded DNA-binding protein [KO:K03111]
JI59_05285  single-stranded DNA-binding protein [KO:K03111]
JI59_07520  single-stranded DNA-binding protein [KO:K03111]
JI59_01350  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
JI59_18985  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
JI59_18880  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
JI59_11150  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
JI59_03595  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
JI59_11640  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
JI59_00180  exonuclease [KO:K02342] [EC:2.7.7.7]
JI59_18120  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
JI59_01215  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
JI59_04345  DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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