KEGG   PATHWAY: padl04137
Entry
padl04137                   Pathway                                
Name
Mitophagy - animal - Pygoscelis adeliae (Adelie penguin)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
padl04137  Mitophagy - animal
padl04137

Other DBs
GO: 0000422
Organism
Pygoscelis adeliae (Adelie penguin) [GN:padl]
Gene
103921736  AMBRA1; LOW QUALITY PROTEIN: activating molecule in BECN1-regulated autophagy protein 1 [KO:K17985]
103918066  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
103921279  TOMM20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
103916957  TOMM70A; mitochondrial import receptor subunit TOM70 [KO:K17768]
103914151  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
103916295  MARCH5; E3 ubiquitin-protein ligase MARCH5 isoform X1 [KO:K10660] [EC:2.3.2.27]
103921138  TRAF2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
103914169  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
103916653  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
103914205  AMFR; E3 ubiquitin-protein ligase AMFR [KO:K10636] [EC:2.3.2.36]
103913755  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
103913427  ARIH1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
103914969  MFN1; mitofusin-1 [KO:K21356] [EC:3.6.5.-]
103917991  MFN2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
103916661  RHOT1; mitochondrial Rho GTPase 1 isoform X1 [KO:K07870] [EC:3.6.5.-]
103913691  RHOT2; mitochondrial Rho GTPase 2 [KO:K07871] [EC:3.6.5.-]
103913174  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103920796  UBB; polyubiquitin-B [KO:K04551]
103918403  TAX1BP1; tax1-binding protein 1 isoform X1 [KO:K21347]
103915750  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
103922071  CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 isoform X1 [KO:K21348]
103915008  OPTN; optineurin isoform X1 [KO:K19946]
103919164  NBR1; next to BRCA1 gene 1 protein isoform X1 [KO:K17987]
103919972  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
103916518  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
103917211  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 isoform X1 [KO:K08341]
103914582  MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
103912390  MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A isoform X1 [KO:K10435]
103916105  MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
103922990  microtubule-associated proteins 1A/1B light chain 3C-like [KO:K10435]
103919109  BECN1; beclin-1 [KO:K08334]
103922738  USP8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
103920052  USP15; ubiquitin carboxyl-terminal hydrolase 15 [KO:K21343] [EC:3.4.19.12]
103925694  USP30; ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
103922195  BCL2L1; bcl-2-like protein 1 [KO:K04570]
103912430  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
103912576  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
103922230  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
103912412  SRC; proto-oncogene tyrosine-protein kinase Src [KO:K05704] [EC:2.7.10.2]
103912402  ULK1; serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
103912609  FUNDC1; FUN14 domain-containing protein 1 [KO:K17986]
103918627  BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
103913089  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15465]
103924358  BCL2L13; bcl-2-like protein 13 isoform X1 [KO:K15485]
103914729  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
103924305  SAMM50; sorting and assembly machinery component 50 homolog [KO:K07277]
103921909  PHB2; prohibitin-2 [KO:K17081]
103921555  NLRX1; NLR family member X1 [KO:K12653]
103915141  MTX1; metaxin-1 [KO:K17776]
103919768  MTX3; metaxin-3 [KO:K17776]
103924652  MTX2; metaxin-2 [KO:K17776]
103923526  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
103914348  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
103915003  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
103915758  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
103913739  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
103918603  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
103913320  JUN; transcription factor AP-1 [KO:K04448]
103916453  HRAS; GTPase HRas [KO:K02833]
103924322  KRAS; GTPase KRas isoform X1 [KO:K07827]
103923578  NRAS; GTPase NRas [KO:K07828]
103919617  MRAS; ras-related protein M-Ras [KO:K07831]
103923806  RRAS2; ras-related protein R-Ras2 [KO:K07830]
103912425  E2F1; transcription factor E2F1 [KO:K17454]
103924259  HIF1A; hypoxia-inducible factor 1-alpha [KO:K08268]
103925632  SP1; transcription factor Sp1 [KO:K04684]
103918984  FOXO3; forkhead box protein O3 [KO:K09408]
103921793  MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455]
103919867  TFEB; transcription factor EB [KO:K15590]
103924834  RABGEF1; rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
103921524  RAB5A; ras-related protein Rab-5A [KO:K07887]
103919498  RAB5C; ras-related protein Rab-5C [KO:K07889]
103915075  MON1A; LOW QUALITY PROTEIN: vacuolar fusion protein MON1 homolog A [KO:K20195]
103913501  CCZ1; vacuolar fusion protein CCZ1 homolog [KO:K27045]
103914394  RAB7A; ras-related protein Rab-7a [KO:K07897]
103919790  RAB7B; ras-related protein Rab-7b [KO:K07898]
103920031  TBC1D15; LOW QUALITY PROTEIN: TBC1 domain family member 15 [KO:K20168]
103917669  ATG9A; autophagy-related protein 9A [KO:K17907]
103925391  OPA1; dynamin-like 120 kDa protein, mitochondrial [KO:K17079] [EC:3.6.5.5]
103922309  VCP; transitional endoplasmic reticulum ATPase [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
padl04140  Autophagy - animal
padl04210  Apoptosis
KO pathway
ko04137   
LinkDB

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