KEGG   PATHWAY: pcz02024
Entry
pcz02024                    Pathway                                
Name
Quorum sensing - Pseudomonas chlororaphis PCL1606
Description
Quorum sensing (QS) is a regulatory system that allows bacteria to share information about cell density and adjust gene expression accordingly. All QS bacteria produce and release chemical signal molecules called autoinducers (AIs) that increase in concentration as a function of cell density. The most commonly studied AIs belong to one of the following three categories: acylated homoserine lactones, also referred to as AI-1, used by Gram-negative bacteria; peptide signals, used by Gram-positive bacteria; and AI-2, used by both Gram-negative and Gram-positive bacteria. QS can be divided into at least 4 steps: production of AIs by the bacterial cell; release of AIs, either actively or passively, into the surrounding environment; recognition of AIs by specific receptors; and leading to changes in gene regulation once they exceed a threshold concentration. The processes controlled by QS include virulence, competence, conjugation, antibiotic production, motility, sporulation, and biofilm formation.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
pcz02024  Quorum sensing
pcz02024

Other DBs
GO: 0009372
Organism
Pseudomonas chlororaphis PCL1606 [GN:pcz]
Gene
PCL1606_55230  RNA chaperone Hfq [KO:K03666]
PCL1606_06620  anthranilate synthase subunit I [KO:K01657] [EC:4.1.3.27]
PCL1606_06640  anthranilate synthase subunit II [KO:K01658] [EC:4.1.3.27]
PCL1606_35600  acyl-homoserine-lactone synthase [KO:K13061] [EC:2.3.1.184]
PCL1606_35580  LuxR family transcriptional regulator [KO:K18099]
PCL1606_25150  phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K01626] [EC:2.5.1.54]
PCL1606_19220  phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K01626] [EC:2.5.1.54]
PCL1606_19020  phospho-2-dehydro-3-deoxyheptonate aldolase [KO:K01626] [EC:2.5.1.54]
PCL1606_19850  sensor histidine kinase [KO:K07645] [EC:2.7.13.3]
PCL1606_19840  DNA-binding response regulator [KO:K07666]
PCL1606_18810  fis family transcriptional regulator [KO:K07667]
PCL1606_34350  LuxR family transcriptional regulator [KO:K18098]
PCL1606_04930  P-type conjugative transfer ATPase TrbB [KO:K20527] [EC:7.4.2.8]
PCL1606_04940  trbC-like protein [KO:K20528]
PCL1606_04950  conjugal transfer protein TrbD [KO:K20529]
PCL1606_04960  conjugal transfer ATPase TrbE [KO:K20530] [EC:7.4.2.8]
PCL1606_04970  conjugal transfer protein TrbJ [KO:K20266]
PCL1606_04990  conjugal transfer protein TrbL [KO:K07344]
PCL1606_05000  conjugal transfer protein TrbF [KO:K20531]
PCL1606_05010  conjugative transfer protein TrbG [KO:K20532]
PCL1606_05020  conjugative transfer protein TrbI [KO:K20533]
PCL1606_34700  spermidine/putrescine ABC transporter substrate-binding protein [KO:K02055]
PCL1606_49770  spermidine/putrescine ABC transporter substrate-binding protein [KO:K02055]
PCL1606_06560  spermidine/putrescine ABC transporter substrate-binding protein [KO:K02055]
PCL1606_17890  ABC transporter substrate-binding protein [KO:K02055]
PCL1606_27760  spermidine/putrescine ABC transporter substrate-binding protein [KO:K02055]
PCL1606_49800  spermidine/putrescine ABC transporter permease [KO:K02053]
PCL1606_06580  polyamine ABC transporter permease [KO:K02053]
PCL1606_17860  ABC transporter permease [KO:K02053]
PCL1606_49790  spermidine/putrescine ABC transporter permease [KO:K02054]
PCL1606_06570  polyamine ABC transporter substrate-binding protein [KO:K02054]
PCL1606_17870  ABC transporter permease [KO:K02054]
PCL1606_49780  polyamine ABC transporter ATP-binding protein [KO:K02052]
PCL1606_06550  spermidine/putrescine ABC transporter ATP-binding protein [KO:K02052]
PCL1606_17850  spermidine/putrescine ABC transporter ATP-binding protein [KO:K02052]
PCL1606_47800  amino acid ABC transporter substrate-binding protein [KO:K01999]
PCL1606_35800  ABC transporter permease [KO:K01999]
PCL1606_54930  ABC transporter [KO:K01999]
PCL1606_30310  ABC transporter [KO:K01999]
PCL1606_47810  branched-chain amino acid ABC transporter, permease protein [KO:K01997]
PCL1606_35820  ABC transporter permease [KO:K01997]
PCL1606_54920  branched-chain amino acid transporter permease subunit LivH [KO:K01997]
PCL1606_30350  ABC transporter permease [KO:K01997]
PCL1606_47820  leucine/isoleucine/valine transporter permease subunit [KO:K01998]
PCL1606_35810  ABC transporter permease [KO:K01998]
PCL1606_54910  branched-chain amino acid ABC transporter permease [KO:K01998]
PCL1606_30340  ABC transporter ATP-binding protein [KO:K01998]
PCL1606_47830  amino acid ABC transporter ATP-binding protein [KO:K01995]
PCL1606_35830  branched-chain amino acid ABC transporter ATP-binding protein [KO:K01995]
PCL1606_54900  amino acid ABC transporter ATP-binding protein [KO:K01995]
PCL1606_30330  amino acid ABC transporter ATP-binding protein [KO:K01995]
PCL1606_47840  amino acid ABC transporter ATPase [KO:K01996]
PCL1606_35790  branched-chain amino acid ABC transporter, ATP-binding protein [KO:K01996]
PCL1606_54890  amino acid ABC transporter ATPase [KO:K01996]
PCL1606_30320  amino acid ABC transporter ATPase [KO:K01996]
PCL1606_11640  acyl-homoserine-lactone synthase [KO:K22956] [EC:2.3.1.184]
PCL1606_11630  LuxR family transcriptional regulator [KO:K19734]
PCL1606_47050  inclusion body protein [KO:K20275]
PCL1606_47060  hypothetical protein [KO:K20275]
PCL1606_45430  type I secretion target [KO:K20276]
PCL1606_15810  long-chain fatty acid--CoA ligase [KO:K01897] [EC:6.2.1.3]
PCL1606_15820  long-chain fatty acid--CoA ligase [KO:K01897] [EC:6.2.1.3]
PCL1606_43490  AMP-binding acetyl-CoA synthetase [KO:K01897] [EC:6.2.1.3]
PCL1606_58950  transcriptional regulator [KO:K10914]
PCL1606_06680  transcriptional regulator [KO:K10914]
PCL1606_58740  crp/Fnr family transcriptional regulator [KO:K10914]
PCL1606_46210  cyclic nucleotide-binding protein [KO:K10914]
PCL1606_60010  fur family transcriptional regulator [KO:K09823]
PCL1606_07470  GTP cyclohydrolase [KO:K01497] [EC:3.5.4.25]
PCL1606_07390  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K11752] [EC:3.5.4.26 1.1.1.193]
PCL1606_53880  membrane protein [KO:K09936]
PCL1606_29590  hemolysin secretion protein D [KO:K18306]
PCL1606_29580  acriflavine resistance protein B [KO:K18307]
PCL1606_47530  multidrug transporter [KO:K18139]
PCL1606_20980  RND transporter [KO:K18139]
PCL1606_30030  ABC transporter substrate-binding protein [KO:K02035]
PCL1606_30180  putative ABC transporter exported protein [KO:K02035]
PCL1606_30020  ABC transporter permease [KO:K02033]
PCL1606_30170  putative ABC transporter membrane protein [KO:K02033]
PCL1606_29980  peptide ABC transporter permease [KO:K02034]
PCL1606_30160  ABC transporter permease [KO:K02034]
PCL1606_29970  ABC transporter ATP-binding protein [KO:K02031 K02032]
PCL1606_30150  ABC transporter ATP-binding protein [KO:K02031 K02032]
PCL1606_60800  insertase [KO:K03217]
PCL1606_07060  preprotein translocase subunit SecY [KO:K03076]
PCL1606_12880  preprotein translocase subunit YajC [KO:K03210]
PCL1606_14800  preprotein translocase subunit SecA [KO:K03070] [EC:7.4.2.8]
PCL1606_03530  cell division protein FtsY [KO:K03110]
PCL1606_57180  preprotein translocase subunit SecB [KO:K03071]
PCL1606_50060  signal recognition particle protein Srp54 [KO:K03106] [EC:3.6.5.4]
PCL1606_28780  phospholipase [KO:K01114] [EC:3.1.4.3]
Compound
C00007  Oxygen
C00009  Orthophosphate
C00059  Sulfate
C00232  Succinate semialdehyde
C00334  4-Aminobutanoate
C00547  L-Noradrenaline
C00788  L-Adrenaline
C01019  L-Fucose
C11837  N-Butyryl-L-homoserine lactone
C11841  N-(3-Oxooctanoyl)homoserine lactone
C11844  N-Heptanoylhomoserine lactone
C11845  N-(3-Hydroxy-7-cis-tetradecenoyl)homoserine lactone
C11848  2-Heptyl-3-hydroxy-quinolone
C16421  AI-2
C16463  3',5'-Cyclic diGMP
C16640  CAI-1
C18049  N-Acyl-L-homoserine lactone
C18206  cis-11-Methyl-2-dodecenoic acid
C20643  2-Heptyl-4(1H)-quinolone
C20677  N-(4-Coumaroyl)-L-homoserine lactone
C20959  (4S)-4-Hydroxy-5-phosphooxypentane-2,3-dione
C21195  N-(3-Hydroxybutanoyl)-L-homoserine lactone
C21197  N-Hexanoyl-L-homoserine lactone
C21198  N-(3-Oxohexanoyl)-L-homoserine lactone
C21199  N-Octanoyl-L-homoserine lactone
C21200  N-3-Hydroxyoctanoyl-L-homoserine lactone
C21201  N-3-Oxo-dodecanoyl-L-homoserine lactone
C21202  cis-2-Dodecenoic acid
C21220  AIP-1
C21221  CSP
C21222  CSP
C21223  Blp
C21224  SHP2
C21225  SHP3
C21226  cCF10
C21227  iCF10
C21228  cAD1
C21229  iAD1
C21230  ComX pheromone
C21231  PhrA pentapeptide
C21232  PhrC pentapeptide
C21233  PhrE pentapeptide
C21234  PhrF pentapeptide
C21235  PhrG pentapeptide
C21236  PhrH pentapeptide
C21237  PhrK pentapeptide
C21238  NprX peptide
C21239  PapR peptide
C21241  AIP-2
C21242  AIP-3
C21243  AIP-4
C21244  AgrD peptide
C21245  AgrD1 peptide
C21246  GBAP
C21382  R-THMF
Reference
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Pereira CS, Thompson JA, Xavier KB
  Title
AI-2-mediated signalling in bacteria.
  Journal
FEMS Microbiol Rev 37:156-81 (2013)
DOI:10.1111/j.1574-6976.2012.00345.x
Reference
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Verma SC, Miyashiro T
  Title
Quorum sensing in the squid-Vibrio symbiosis.
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Int J Mol Sci 14:16386-401 (2013)
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Reference
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Gimme shelter: how Vibrio fischeri successfully navigates an animal's multiple environments.
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Front Microbiol 4:356 (2013)
DOI:10.3389/fmicb.2013.00356
Reference
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Papaioannou E, Utari PD, Quax WJ
  Title
Choosing an appropriate infection model to study quorum sensing inhibition in Pseudomonas infections.
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Int J Mol Sci 14:19309-40 (2013)
DOI:10.3390/ijms140919309
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Quinolones: from antibiotics to autoinducers.
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FEMS Microbiol Rev 35:247-74 (2011)
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The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.
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Reference
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Whiteley M, Greenberg EP
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Promoter specificity elements in Pseudomonas aeruginosa quorum-sensing-controlled genes.
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J Bacteriol 183:5529-34 (2001)
DOI:10.1128/JB.183.19.5529-5534.2001
Reference
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Phenazine-1-carboxamide production in the biocontrol strain Pseudomonas chlororaphis PCL1391 is regulated by multiple factors secreted into the growth medium.
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Mol Plant Microbe Interact 14:969-79 (2001)
DOI:10.1094/MPMI.2001.14.8.969
Reference
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Hughes DT, Clarke MB, Yamamoto K, Rasko DA, Sperandio V
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The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC).
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PLoS Pathog 5:e1000553 (2009)
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Reference
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Enterohemorrhagic Escherichia coli virulence regulation by two bacterial adrenergic kinases, QseC and QseE.
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Infect Immun 80:688-703 (2012)
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Reference
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Nature 492:113-7 (2012)
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Reference
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Antisense RNA that affects Rhodopseudomonas palustris quorum-sensing signal receptor expression.
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Proc Natl Acad Sci U S A 109:12141-6 (2012)
DOI:10.1073/pnas.1200243109
Reference
  Authors
Danino VE, Wilkinson A, Edwards A, Downie JA
  Title
Recipient-induced transfer of the symbiotic plasmid pRL1JI in Rhizobium leguminosarum bv. viciae is regulated by a quorum-sensing relay.
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Mol Microbiol 50:511-25 (2003)
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Reference
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Antonie Van Leeuwenhoek 81:397-407 (2002)
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Reference
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Analysis of quorum-sensing-dependent control of rhizosphere-expressed (rhi) genes in Rhizobium leguminosarum bv. viciae.
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J Bacteriol 181:3816-23 (1999)
DOI:10.1128/JB.181.12.3816-3823.1999
Reference
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  Title
Functions and regulation of quorum-sensing in Agrobacterium tumefaciens.
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Front Plant Sci 5:14 (2014)
DOI:10.3389/fpls.2014.00014
Reference
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In planta fitness-cost of the Atu4232-regulon encoding for a selective GABA-binding sensor in Agrobacterium.
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Commun Integr Biol 6:e23692 (2013)
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Reference
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  Title
Quorum sensing in Erwinia species.
  Journal
Anal Bioanal Chem 387:415-23 (2007)
DOI:10.1007/s00216-006-0701-1
Reference
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Quorum sensing, virulence and secondary metabolite production in plant soft-rotting bacteria.
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Philos Trans R Soc Lond B Biol Sci 362:1165-83 (2007)
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Reference
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Identification and characterization of three novel EsaI/EsaR quorum-sensing controlled stewartan exopolysaccharide biosynthetic genes in Pantoea stewartii ssp. stewartii.
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Mol Microbiol 74:903-13 (2009)
DOI:10.1111/j.1365-2958.2009.06906.x
Reference
PMID:7665477
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Beck von Bodman S, Farrand SK
  Title
Capsular polysaccharide biosynthesis and pathogenicity in Erwinia stewartii require induction by an N-acylhomoserine lactone autoinducer.
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J Bacteriol 177:5000-8 (1995)
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Reference
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O'Grady EP, Viteri DF, Malott RJ, Sokol PA
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Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia.
  Journal
BMC Genomics 10:441 (2009)
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Reference
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Malott RJ, Baldwin A, Mahenthiralingam E, Sokol PA
  Title
Characterization of the cciIR quorum-sensing system in Burkholderia cenocepacia.
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Infect Immun 73:4982-92 (2005)
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Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover.
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Proc Natl Acad Sci U S A 109:15479-84 (2012)
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Reference
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Suppiger A, Schmid N, Aguilar C, Pessi G, Eberl L
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Two quorum sensing systems control biofilm formation and virulence in members of the Burkholderia cepacia complex.
  Journal
Virulence 4:400-9 (2013)
DOI:10.4161/viru.25338
Reference
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Listening to a new language: DSF-based quorum sensing in Gram-negative bacteria.
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Chem Rev 111:160-73 (2011)
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Communication with a growing family: diffusible signal factor (DSF) signaling in bacteria.
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Trends Microbiol 19:145-52 (2011)
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Reference
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Kim J, Kim JG, Kang Y, Jang JY, Jog GJ, Lim JY, Kim S, Suga H, Nagamatsu T, Hwang I
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Quorum sensing and the LysR-type transcriptional activator ToxR regulate toxoflavin biosynthesis and transport in Burkholderia glumae.
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Mol Microbiol 54:921-34 (2004)
DOI:10.1111/j.1365-2958.2004.04338.x
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Kim J, Kang Y, Choi O, Jeong Y, Jeong JE, Lim JY, Kim M, Moon JS, Suga H, Hwang I
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Regulation of polar flagellum genes is mediated by quorum sensing and FlhDC in Burkholderia glumae.
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Mol Microbiol 64:165-79 (2007)
DOI:10.1111/j.1365-2958.2007.05646.x
Reference
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  Title
Quorum sensing in Chromobacterium violaceum: DNA recognition and gene regulation by the CviR receptor.
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J Bacteriol 193:3871-8 (2011)
DOI:10.1128/JB.05125-11
Reference
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Chen G, Swem LR, Swem DL, Stauff DL, O'Loughlin CT, Jeffrey PD, Bassler BL, Hughson FM
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A strategy for antagonizing quorum sensing.
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Mol Cell 42:199-209 (2011)
DOI:10.1016/j.molcel.2011.04.003
Reference
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Hao G, Burr TJ
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Regulation of long-chain N-acyl-homoserine lactones in Agrobacterium vitis.
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J Bacteriol 188:2173-83 (2006)
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Reference
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Savka MA, Le PT, Burr TJ
  Title
LasR receptor for detection of long-chain quorum-sensing signals: identification of N-acyl-homoserine lactones encoded by the avsI locus of Agrobacterium vitis.
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Curr Microbiol 62:101-10 (2011)
DOI:10.1007/s00284-010-9679-1
Reference
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Le KY, Otto M
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Quorum-sensing regulation in staphylococci-an overview.
  Journal
Front Microbiol 6:1174 (2015)
DOI:10.3389/fmicb.2015.01174
Reference
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Queck SY, Jameson-Lee M, Villaruz AE, Bach TH, Khan BA, Sturdevant DE, Ricklefs SM, Li M, Otto M
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RNAIII-independent target gene control by the agr quorum-sensing system: insight into the evolution of virulence regulation in Staphylococcus aureus.
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Mol Cell 32:150-8 (2008)
DOI:10.1016/j.molcel.2008.08.005
Reference
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Darkoh C, DuPont HL, Norris SJ, Kaplan HB
  Title
Toxin synthesis by Clostridium difficile is regulated through quorum signaling.
  Journal
MBio 6:e02569 (2015)
DOI:10.1128/mBio.02569-14
Reference
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Vidal JE, Shak JR, Canizalez-Roman A
  Title
The CpAL quorum sensing system regulates production of hemolysins CPA and PFO to build Clostridium perfringens biofilms.
  Journal
Infect Immun 83:2430-42 (2015)
DOI:10.1128/IAI.00240-15
Reference
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Ohtani K, Yuan Y, Hassan S, Wang R, Wang Y, Shimizu T
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Virulence gene regulation by the agr system in Clostridium perfringens.
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J Bacteriol 191:3919-27 (2009)
DOI:10.1128/JB.01455-08
Reference
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Li YH, Tian X
  Title
Quorum sensing and bacterial social interactions in biofilms.
  Journal
Sensors (Basel) 12:2519-38 (2012)
DOI:10.3390/s120302519
Reference
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Berg KH, Biornstad TJ, Johnsborg O, Havarstein LS
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Properties and biological role of streptococcal fratricins.
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Appl Environ Microbiol 78:3515-22 (2012)
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Reference
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Comparing the cariogenic species Streptococcus sobrinus and S. mutans on whole genome level.
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J Oral Microbiol 6:26189 (2014)
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Reference
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Jimenez JC, Federle MJ
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Quorum sensing in group A Streptococcus.
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Front Cell Infect Microbiol 4:127 (2014)
DOI:10.3389/fcimb.2014.00127
Reference
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Peptide pheromone signaling in Streptococcus and Enterococcus.
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FEMS Microbiol Rev 38:473-92 (2014)
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Reference
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Reference
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Reference
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  Title
Growth phase-dependent modulation of Rgg binding specificity in Streptococcus pyogenes.
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J Bacteriol 194:3961-71 (2012)
DOI:10.1128/JB.06709-11
Reference
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Clewell DB
  Title
Tales of conjugation and sex pheromones: A plasmid and enterococcal odyssey.
  Journal
Mob Genet Elements 1:38-54 (2011)
DOI:10.4161/mge.1.1.15409
Reference
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Wardal E, Sadowy E, Hryniewicz W
  Title
Complex nature of enterococcal pheromone-responsive plasmids.
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Pol J Microbiol 59:79-87 (2010)
Reference
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Roux A, Payne SM, Gilmore MS
  Title
Microbial telesensing: probing the environment for friends, foes, and food.
  Journal
Cell Host Microbe 6:115-24 (2009)
DOI:10.1016/j.chom.2009.07.004
Reference
  Authors
Slamti L, Perchat S, Huillet E, Lereclus D
  Title
Quorum sensing in Bacillus thuringiensis is required for completion of a full infectious cycle in the insect.
  Journal
Toxins (Basel) 6:2239-55 (2014)
DOI:10.3390/toxins6082239
Reference
  Authors
Lopez D, Kolter R
  Title
Extracellular signals that define distinct and coexisting cell fates in Bacillus subtilis.
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FEMS Microbiol Rev 34:134-49 (2010)
DOI:10.1111/j.1574-6976.2009.00199.x
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Stephenson S, Mueller C, Jiang M, Perego M
  Title
Molecular analysis of Phr peptide processing in Bacillus subtilis.
  Journal
J Bacteriol 185:4861-71 (2003)
DOI:10.1128/JB.185.16.4861-4871.2003
Reference
  Authors
Lanigan-Gerdes S, Dooley AN, Faull KF, Lazazzera BA
  Title
Identification of subtilisin, Epr and Vpr as enzymes that produce CSF, an extracellular signalling peptide of Bacillus subtilis.
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Mol Microbiol 65:1321-33 (2007)
DOI:10.1111/j.1365-2958.2007.05869.x
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  Authors
Kleerebezem M
  Title
Quorum sensing control of lantibiotic production; nisin and subtilin autoregulate their own biosynthesis.
  Journal
Peptides 25:1405-14 (2004)
DOI:10.1016/j.peptides.2003.10.021
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Rutherford ST, Bassler BL
  Title
Bacterial quorum sensing: its role in virulence and possibilities for its control.
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Cold Spring Harb Perspect Med 2:a012427 (2012)
DOI:10.1101/cshperspect.a012427
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LaSarre B, Federle MJ
  Title
Exploiting quorum sensing to confuse bacterial pathogens.
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Microbiol Mol Biol Rev 77:73-111 (2013)
DOI:10.1128/MMBR.00046-12
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Sifri CD
  Title
Healthcare epidemiology: quorum sensing: bacteria talk sense.
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Clin Infect Dis 47:1070-6 (2008)
DOI:10.1086/592072
Related
pathway
pcz02040  Flagellar assembly
KO pathway
ko02024   
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