KEGG   PATHWAY: plu00970
Entry
plu00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Photorhabdus laumondii subsp. laumondii TTO1
Class
Genetic Information Processing; Translation
Pathway map
plu00970  Aminoacyl-tRNA biosynthesis
plu00970

Organism
Photorhabdus laumondii subsp. laumondii TTO1 [GN:plu]
Gene
tRNA-Ala-1  tRNA-Ala; tRNA-Ala [KO:K14218]
tRNA-Ala-5  tRNA-Ala; tRNA-Ala [KO:K14218]
tRNA-Ala-2  tRNA-Ala; tRNA-Ala [KO:K14218]
tRNA-Ala-3  tRNA-Ala; tRNA-Ala [KO:K14218]
tRNA-Ala-4  tRNA-Ala; tRNA-Ala [KO:K14218]
tRNA-Arg-6  tRNA-Arg; tRNA-Arg [KO:K14219]
tRNA-Arg-4  tRNA-Arg; tRNA-Arg [KO:K14219]
tRNA-Arg-1  tRNA-Arg; tRNA-Arg [KO:K14219]
tRNA-Arg-2  tRNA-Arg; tRNA-Arg [KO:K14219]
tRNA-Arg-3  tRNA-Arg; tRNA-Arg [KO:K14219]
tRNA-Arg-5  tRNA-Arg; tRNA-Arg [KO:K14219]
tRNA-Asn-1  tRNA-Asn; tRNA-Asn [KO:K14220]
tRNA-Asn-3  tRNA-Asn; tRNA-Asn [KO:K14220]
tRNA-Asn-2  tRNA-Asn; tRNA-Asn [KO:K14220]
tRNA-Asn-4  tRNA-Asn; tRNA-Asn [KO:K14220]
tRNA-Asp-2  tRNA-Asp; tRNA-Asp [KO:K14221]
tRNA-Asp-3  tRNA-Asp; tRNA-Asp [KO:K14221]
tRNA-Asp-1  tRNA-Asp; tRNA-Asp [KO:K14221]
tRNA-Cys  tRNA-Cys; tRNA-Cys [KO:K14222]
tRNA-Gln-1  tRNA-Gln; tRNA-Gln [KO:K14223]
tRNA-Gln-2  tRNA-Gln; tRNA-Gln [KO:K14223]
tRNA-Gln-3  tRNA-Gln; tRNA-Gln [KO:K14223]
tRNA-Glu-1  tRNA-Glu; tRNA-Glu [KO:K14224]
tRNA-Glu-4  tRNA-Glu; tRNA-Glu [KO:K14224]
tRNA-Glu-3  tRNA-Glu; tRNA-Glu [KO:K14224]
tRNA-Glu-2  tRNA-Glu; tRNA-Glu [KO:K14224]
tRNA-Gly-2  tRNA-Gly; tRNA-Gly [KO:K14225]
tRNA-Gly-6  tRNA-Gly; tRNA-Gly [KO:K14225]
tRNA-Gly-1  tRNA-Gly; tRNA-Gly [KO:K14225]
tRNA-Gly-4  tRNA-Gly; tRNA-Gly [KO:K14225]
tRNA-Gly-5  tRNA-Gly; tRNA-Gly [KO:K14225]
tRNA-Gly-3  tRNA-Gly; tRNA-Gly [KO:K14225]
tRNA-His  tRNA-His; tRNA-His [KO:K14226]
tRNA-Ile-1  tRNA-Ile; tRNA-Ile [KO:K14227]
tRNA-Ile-3  tRNA-Ile; tRNA-Ile [KO:K14227]
tRNA-Ile-2  tRNA-Ile; tRNA-Ile [KO:K14227]
tRNA-Leu-1  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Leu-2  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Leu-3  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Leu-7  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Leu-4  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Leu-5  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Leu-6  tRNA-Leu; tRNA-Leu [KO:K14228]
tRNA-Lys-1  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-2  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-5  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-4  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-3  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-7  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-10  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-6  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-11  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-8  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-9  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-13  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Lys-12  tRNA-Lys; tRNA-Lys [KO:K14229]
tRNA-Met-5  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Met-4  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Met-1  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Met-2  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Met-7  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Met-3  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Met-6  tRNA-Met; tRNA-Met [KO:K14230]
tRNA-Phe-1  tRNA-Phe; tRNA-Phe [KO:K14231]
tRNA-Phe-2  tRNA-Phe; tRNA-Phe [KO:K14231]
tRNA-Pro-1  tRNA-Pro; tRNA-Pro [KO:K14232]
tRNA-Pro-3  tRNA-Pro; tRNA-Pro [KO:K14232]
tRNA-Pro-2  tRNA-Pro; tRNA-Pro [KO:K14232]
tRNA-Ser-1  tRNA-Ser; tRNA-Ser [KO:K14233]
tRNA-Ser-3  tRNA-Ser; tRNA-Ser [KO:K14233]
tRNA-Ser-2  tRNA-Ser; tRNA-Ser [KO:K14233]
tRNA-Ser-4  tRNA-Ser; tRNA-Ser [KO:K14233]
tRNA-Thr-1  tRNA-Thr; tRNA-Thr [KO:K14234]
tRNA-Thr-2  tRNA-Thr; tRNA-Thr [KO:K14234]
tRNA-Thr-3  tRNA-Thr; tRNA-Thr [KO:K14234]
tRNA-Thr-4  tRNA-Thr; tRNA-Thr [KO:K14234]
tRNA-Trp  tRNA-Trp; tRNA-Trp [KO:K14235]
tRNA-Tyr-1  tRNA-Tyr; tRNA-Tyr [KO:K14236]
tRNA-Tyr-2  tRNA-Tyr; tRNA-Tyr [KO:K14236]
tRNA-Val-1  tRNA-Val; tRNA-Val [KO:K14237]
tRNA-Val-3  tRNA-Val; tRNA-Val [KO:K14237]
tRNA-Val-2  tRNA-Val; tRNA-Val [KO:K14237]
tRNA-Val-4  tRNA-Val; tRNA-Val [KO:K14237]
tRNA-Val-5  tRNA-Val; tRNA-Val [KO:K14237]
tRNA-Sec  tRNA-SeC(p); tRNA-Sec [KO:K14238]
plu1401  gltX; glutamyl-tRNA synthetase, catalytic subunit [KO:K01885] [EC:6.1.1.17]
plu2200  unnamed protein product; Similar to unknown protein and to glutamyl-tRNA(Gln) amidotransferase chain A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
plu1319  glnS; glutaminyl-tRNA synthetase precursor (glutamine--tRNA ligase) [KO:K01886] [EC:6.1.1.18]
plu1250  alaS; alanyl-tRNA synthetase (alanine--tRNA ligase) [KO:K01872] [EC:6.1.1.7]
plu0192  unnamed protein product; Similar to unknown protein [KO:K01872] [EC:6.1.1.7]
plu2107  aspS; aspartyl-tRNA synthetase (aspartate--tRNA ligase) (asprs) [KO:K01876] [EC:6.1.1.12]
plu1753  asnS; asparaginyl-tRNA synthetase [KO:K01893] [EC:6.1.1.22]
plu0293  glyQ; glycyl-tRNA synthetase alpha chain (glycine--tRNA ligase alpha chain) (GlyRS) [KO:K01878] [EC:6.1.1.14]
plu0294  glyS; glycyl-tRNA synthetase beta chain (glycine--TRNA ligase beta chain) (GlyRS) [KO:K01879] [EC:6.1.1.14]
plu2669  thrS; threonyl-tRNA synthetase (threonine--tRNA ligase) [KO:K01868] [EC:6.1.1.3]
plu1604  serS; seryl-tRNA synthetase (serine--tRNA ligase) (SERRS) [KO:K01875] [EC:6.1.1.11]
plu4897  selA; L-seryl-tRNA(Sec) selenium transferase (cysteinyl-tRNA(Sec) selenium transferase) (selenocysteine synthase) [KO:K01042] [EC:2.9.1.1]
plu3804  cysS; cysteinyl-tRNA synthetase (cysteine--tRNA ligase) (CysRS) [KO:K01883] [EC:6.1.1.16]
plu4265  unnamed protein product; Similar to methionyl-tRNA synthetase [KO:K01874] [EC:6.1.1.10]
plu1554  metG; methionyl-tRNA synthetase [KO:K01874] [EC:6.1.1.10]
plu4696  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
plu4830  unnamed protein product; Some similarities with formyltransferase [KO:K00604] [EC:2.1.2.9]
plu1413  unnamed protein product; Some similarities with methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
plu4483  valS; valyl-tRNA synthetase (valine--tRNA ligase) (VALRS) [KO:K01873] [EC:6.1.1.9]
plu1303  leuS; leucine-tRNA synthetase (leucine--tRNA ligase) (LEURS) [KO:K01869] [EC:6.1.1.4]
plu0591  ileS; isoleucine tRNA synthetase [KO:K01870] [EC:6.1.1.5]
plu3548  lysS; Lysyl-tRNA synthetase (Lysine--tRNA ligase) [KO:K04567] [EC:6.1.1.6]
plu3928  unnamed protein product; Some similarities with lysine-tRNA ligase LysS [KO:K04566] [EC:6.1.1.6]
plu2092  argS; Arginyl-tRNA synthetase (Arginine-tRNA ligase) [KO:K01887] [EC:6.1.1.19]
plu0692  proS; prolyl-tRNA synthetase [KO:K01881] [EC:6.1.1.15]
plu1377  hisS; histidine-tRNA ligase [KO:K01892] [EC:6.1.1.21]
plu2665  pheS; phenylalanyl-tRNA synthetase alpha chain (phenylalanine--tRNA ligase alpha chain) [KO:K01889] [EC:6.1.1.20]
plu2664  pheT; phenylalanyl-tRNA synthetase beta chain (phenylalanine--tRNA ligase beta chain) [KO:K01890] [EC:6.1.1.20]
plu2596  tyrS; tyrosine-tRNA synthetase (tyrosine--tRNA ligase) (TYRRS) [KO:K01866] [EC:6.1.1.1]
plu0201  unnamed protein product; Similar to tyrosyl-tRNA synthetase 2 (tyrosine--tRNA ligase) [KO:K01866] [EC:6.1.1.1]
plu0084  trpS; tryptophanyl-tRNA synthetase (tryptophan--tRNA ligase) (TRPRS) [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
plu00250  Alanine, aspartate and glutamate metabolism
plu00260  Glycine, serine and threonine metabolism
plu00270  Cysteine and methionine metabolism
plu00290  Valine, leucine and isoleucine biosynthesis
plu00300  Lysine biosynthesis
plu00330  Arginine and proline metabolism
plu00340  Histidine metabolism
plu00380  Tryptophan metabolism
plu00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   
LinkDB

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