KEGG   PATHWAY: pot00630
Entry
pot00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Porphyrobacter sp. YT40
Class
Metabolism; Carbohydrate metabolism
Pathway map
pot00630  Glyoxylate and dicarboxylate metabolism
pot00630

Module
pot_M00012  Glyoxylate cycle [PATH:pot00630]
pot_M00621  Glycine cleavage system [PATH:pot00630]
pot_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pot00630]
Other DBs
GO: 0046487 0043648
Organism
Porphyrobacter sp. YT40 [GN:pot]
Gene
E2E27_12680  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
E2E27_15965  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E2E27_08655  malate synthase G [KO:K01638] [EC:2.3.3.9]
E2E27_09680  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E2E27_06175  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
E2E27_11005  citrate synthase [KO:K01647] [EC:2.3.3.1]
E2E27_00890  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E2E27_01140  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
E2E27_01145  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E2E27_01890  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E2E27_10290  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E2E27_10865  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E2E27_15890  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E2E27_03960  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
E2E27_13210  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
E2E27_09260  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
E2E27_13155  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
E2E27_13220  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
E2E27_13200  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
E2E27_08095  catalase [KO:K03781] [EC:1.11.1.6]
E2E27_10855  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
E2E27_07045  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
E2E27_08760  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
E2E27_15695  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E2E27_12355  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E2E27_06135  aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
E2E27_06140  glycine dehydrogenase subunit 2 [KO:K00283] [EC:1.4.4.2]
E2E27_06120  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
E2E27_09655  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2E27_11305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2E27_15125  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E2E27_06125  gcvH; glycine cleavage system protein GcvH [KO:K02437]
E2E27_04025  sugar phosphate isomerase/epimerase [KO:K01816] [EC:5.3.1.22]
E2E27_18070  glycerate kinase [KO:K11529] [EC:2.7.1.165]
E2E27_16165  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E2E27_01620  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pot00010  Glycolysis / Gluconeogenesis
pot00020  Citrate cycle (TCA cycle)
pot00030  Pentose phosphate pathway
pot00053  Ascorbate and aldarate metabolism
pot00071  Fatty acid degradation
pot00230  Purine metabolism
pot00250  Alanine, aspartate and glutamate metabolism
pot00260  Glycine, serine and threonine metabolism
pot00620  Pyruvate metabolism
pot00750  Vitamin B6 metabolism
pot00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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