KEGG   PATHWAY: pou04144
Entry
pou04144                    Pathway                                
Name
Endocytosis - Penicillium oxalicum
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
pou04144  Endocytosis
pou04144

Other DBs
GO: 0006897
Organism
Penicillium oxalicum [GN:pou]
Gene
POX_b02763  ADP-ribosylation factor 6 [KO:K07941]
POX_g09060  Phosphatidylinositol 4-phosphate 5-kinase its3 [KO:K00889] [EC:2.7.1.68]
POX_g09121  Phospholipase D1 [KO:K01115] [EC:3.1.4.4]
POX_e06192  hypothetical protein [KO:K01115] [EC:3.1.4.4]
POX_d05021  hypothetical protein [KO:K01115] [EC:3.1.4.4]
POX_b02296  putative clathrin heavy chain [KO:K04646]
POX_b02201  AP-2 complex subunit alpha [KO:K11824]
POX_f07927  AP-1 complex subunit beta-1 [KO:K11825]
POX_a00417  AP-2 complex subunit mu [KO:K11826]
POX_c03720  AP-2 complex subunit sigma [KO:K11827]
POX_g08568  Protein hob1 [KO:K12562]
POX_a01745  hypothetical protein [KO:K12471]
POX_b02622  ENTH domain-containing protein [KO:K12471]
POX_b03347  hypothetical protein [KO:K12472]
POX_c04005  hypothetical protein [KO:K19366]
POX_d05762  putative E3 ubiquitin-protein ligase hulA [KO:K10591] [EC:2.3.2.26]
POX_f07523  hypothetical protein [KO:K23612]
POX_c03640  Actin-related protein 2 [KO:K17260]
POX_d05262  Actin-related protein 3 [KO:K18584]
POX_e06531  Actin-related protein 2/3 complex subunit 1 [KO:K05757]
POX_b03331  Actin-related protein 2/3 complex subunit 2 [KO:K05758]
POX_a00033  Actin-related protein [KO:K05756]
POX_f07513  Actin-related protein 2/3 complex subunit 4 [KO:K05755]
POX_b02793  hypothetical protein [KO:K05754]
POX_e06400  Heat shock 70 kDa protein [KO:K03283]
POX_c04425  Ribosome-associated molecular chaperone SSB1 [KO:K03283]
POX_e07296  F-actin-capping protein subunit alpha [KO:K10364]
POX_d05764  Vacuolar protein sorting-associated protein 29 [KO:K18467]
POX_a01430  Vacuolar protein sorting-associated protein 26 [KO:K18466]
POX_b03177  hypothetical protein [KO:K18468]
POX_g08826  Sorting nexin-3 [KO:K17918]
POX_a01014  hypothetical protein [KO:K11839] [EC:3.4.19.12]
POX_g08750  AMSH-like protease sst2 [KO:K11866] [EC:3.4.19.12]
POX_d05318  putative Ras-related protein Rab7 [KO:K07897]
POX_a01015  Vacuolar protein sorting-associated protein 27 [KO:K12182]
POX_a01000  Class E vacuolar protein-sorting machinery protein hse1 [KO:K04705]
POX_g08564  hypothetical protein [KO:K12183]
POX_c03845  Vacuolar protein sorting-associated protein 28 [KO:K12184]
POX_b02272  hypothetical protein [KO:K12188]
POX_b02246  hypothetical protein [KO:K12190]
POX_a01450  hypothetical protein [KO:K12189]
POX_d05985  Charged multivesicular body protein 6 [KO:K12195]
POX_e06669  Vacuolar-sorting protein snf7 [KO:K12194]
POX_d05176  hypothetical protein [KO:K12193]
POX_d05466  DOA4-independent degradation protein 4 [KO:K12191]
POX_d05008  hypothetical protein [KO:K15053]
POX_b02975  Vacuolar protein sorting-associated protein 4 [KO:K12196]
POX_e07024  hypothetical protein [KO:K12199]
POX_g09204  hypothetical protein [KO:K12197]
POX_a01561  Charged multivesicular body protein 5 [KO:K12198]
POX_a01339  hypothetical protein [KO:K17917]
POX_e06613  GTP-binding protein rhoA [KO:K04513]
POX_b02335  GTP-binding protein ypt5 [KO:K07889]
POX_b02797  Vacuolar protein sorting-associated protein 21 [KO:K07889]
POX_g08623  hypothetical protein [KO:K12481]
POX_c04498  Vacuolar protein sorting-associated protein 45 [KO:K12479]
POX_a01617  Sorting nexin-4 [KO:K17919]
POX_b02146  GTP-binding protein ypt2 [KO:K07901]
POX_b03379  Ras-related protein Rab-11B [KO:K07904]
POX_a01908  Kinesin heavy chain [KO:K10396]
POX_c04704  Cell division control protein [KO:K04393]
POX_a01027  hypothetical protein [KO:K12486]
POX_a01028  hypothetical protein [KO:K12486]
POX_h09609  hypothetical protein [KO:K12488]
POX_a00275  hypothetical protein [KO:K12492]
POX_f07871  hypothetical protein [KO:K12493]
POX_e06187  hypothetical protein [KO:K18442]
POX_d05295  hypothetical protein [KO:K18443]
POX_c04220  ADP-ribosylation factor [KO:K07937]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
pou04070  Phosphatidylinositol signaling system
pou04130  SNARE interactions in vesicular transport
KO pathway
ko04144   
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