KEGG   PATHWAY: ptg04210
Entry
ptg04210                    Pathway                                
Name
Apoptosis - Panthera tigris altaica (Amur tiger)
Description
Apoptosis is a genetically programmed process for the elimination of damaged or redundant cells by activation of caspases (aspartate-specific cysteine proteases). The onset of apoptosis is controlled by numerous interrelating processes. The 'extrinsic' pathway involves stimulation of members of the tumor necrosis factor (TNF) receptor subfamily, such as TNFRI, CD95/Fas or TRAILR (death receptors), located at the cell surface, by their specific ligands, such as TNF-alpha, FasL or TRAIL, respectively. The 'intrinsic' pathway is activated mainly by non-receptor stimuli, such as DNA damage, ER stress, metabolic stress, UV radiation or growth-factor deprivation. The central event in the 'intrinsic' pathway is the mitochondrial outer membrane permeabilization (MOMP), which leads to the release of cytochrome c. These two pathways converge at the level of effector caspases, such as caspase-3 and caspase-7. The third major pathway is initiated by the constituents of cytotoxic granules (e.g. Perforin and Granzyme B) that are released by CTLs (cytotoxic T-cells) and NK (natural killer) cells. Granzyme B, similarly to the caspases, cleaves its substrates after aspartic acid residues, suggesting that this protease has the ability to activate members of the caspase family directly. It is the balance between the pro-apoptotic and anti-apoptotic signals that eventually determines whether cells will undergo apoptosis, survive or proliferate. TNF family of ligands activates anti-apoptotic or cell-survival signals as well as apoptotic signals. NGF and Interleukin-3 promotes the survival, proliferation and differentiation of neurons or hematopoietic cells, respectively. Withdrawal of these growth factors leads to cell death, as described above.
Class
Cellular Processes; Cell growth and death
Pathway map
ptg04210  Apoptosis
ptg04210

Other DBs
GO: 0006915
Organism
Panthera tigris altaica (Amur tiger) [GN:ptg]
Gene
102963342  TNFSF10; tumor necrosis factor superfamily member 10 [KO:K04721]
102952670  tumor necrosis factor receptor superfamily member 1A-like [KO:K04722]
102953222  FASLG; Fas ligand [KO:K04389]
102958442  FAS; Fas cell surface death receptor [KO:K04390]
102958919  TNF; tumor necrosis factor [KO:K03156]
102956793  TNFRSF1A; TNF receptor superfamily member 1A [KO:K03158]
102968597  TRADD; TNFRSF1A associated via death domain [KO:K03171]
102963219  CFLAR; CASP8 and FADD like apoptosis regulator [KO:K04724]
102962460  CASP8; caspase 8 [KO:K04398] [EC:3.4.22.61]
102962753  CASP10; caspase 10 [KO:K04400] [EC:3.4.22.63]
102964120  group XIIA secretory phospholipase A2 [KO:K04396] [EC:3.4.22.59]
102954729  CASP3; caspase 3 [KO:K02187] [EC:3.4.22.56]
102951959  CASP7; caspase 7 [KO:K04397] [EC:3.4.22.60]
102951809  BID; BH3 interacting domain death agonist [KO:K04726]
102949153  BAX; BCL2 associated X, apoptosis regulator [KO:K02159]
102970767  BAK1; BCL2 antagonist/killer 1 [KO:K14021]
102969249  DIABLO; diablo IAP-binding mitochondrial protein [KO:K10522]
102954386  SEPT4; septin 4 [KO:K16943]
102968855  HTRA2; HtrA serine peptidase 2 [KO:K08669] [EC:3.4.21.108]
102966744  cytochrome c 2-like [KO:K08738]
102952864  cytochrome c-like [KO:K08738]
102960081  cytochrome c [KO:K08738]
102964536  APAF1; apoptotic peptidase activating factor 1 [KO:K02084]
102967404  CASP9; caspase 9 [KO:K04399] [EC:3.4.22.62]
102954346  PRF1; perforin 1 [KO:K07818]
102967670  mast cell protease 1A-like [KO:K01353] [EC:3.4.21.79]
102957957  GZMB; granzyme B [KO:K01353] [EC:3.4.21.79]
102969257  TUBAL3; tubulin alpha like 3 [KO:K07374]
102953141  tubulin alpha-1A chain [KO:K07374]
102954023  tubulin alpha-1A chain-like [KO:K07374]
102953725  TUBA1C; tubulin alpha-1C chain [KO:K07374]
102950928  TUBA8; tubulin alpha 8 [KO:K07374]
102962068  TUBA4A; tubulin alpha 4a [KO:K07374]
102951399  tubulin alpha-8 chain [KO:K07374]
102965985  MCL1; BCL2 family apoptosis regulator [KO:K02539]
102971629  ACTG1; actin gamma 1 [KO:K05692]
102971401  ACTB; actin beta [KO:K05692]
102966142  SPTAN1; spectrin alpha, non-erythrocytic 1 [KO:K06114]
102967799  LMNA; lamin A/C [KO:K12641]
102951002  LMNB1; lamin B1 [KO:K07611]
102971661  PARP1; poly(ADP-ribose) polymerase 1 [KO:K24070] [EC:2.4.2.30]
102949402  PARP3; poly(ADP-ribose) polymerase family member 3 [KO:K10798] [EC:2.4.2.30]
102959138  PARP2; poly(ADP-ribose) polymerase 2 [KO:K10798] [EC:2.4.2.30]
102951109  PARP4; poly(ADP-ribose) polymerase family member 4 [KO:K10798] [EC:2.4.2.30]
102954514  DFFA; DNA fragmentation factor subunit alpha [KO:K02310]
102954920  DFFB; DNA fragmentation factor subunit beta [KO:K02311] [EC:3.-.-.-]
102955786  ENDOG; endonuclease G [KO:K01173]
102957119  AIFM1; apoptosis inducing factor mitochondria associated 1 [KO:K04727] [EC:1.-.-.-]
102955540  ERN1; endoplasmic reticulum to nucleus signaling 1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
102966802  TRAF2; TNF receptor associated factor 2 [KO:K03173] [EC:2.3.2.27]
102963245  ITPR1; inositol 1,4,5-trisphosphate receptor type 1 [KO:K04958]
102971840  ITPR2; inositol 1,4,5-trisphosphate receptor type 2 [KO:K04959]
102967639  ITPR3; inositol 1,4,5-trisphosphate receptor type 3 [KO:K04960]
102955453  CAPN1; calpain 1 [KO:K01367] [EC:3.4.22.52]
102968230  caspase-12-like [KO:K04741] [EC:3.4.22.-]
102963843  EIF2AK3; eukaryotic translation initiation factor 2 alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
102962011  EIF2S1; eukaryotic translation initiation factor 2 subunit alpha [KO:K03237]
102950077  ATF4; activating transcription factor 4 [KO:K04374]
102965918  DDIT3; DNA damage inducible transcript 3 [KO:K04452]
102968829  CTSB; cathepsin B [KO:K01363] [EC:3.4.22.1]
102956745  CTSC; cathepsin C [KO:K01275] [EC:3.4.14.1]
102948473  CTSF; cathepsin F [KO:K01373] [EC:3.4.22.41]
102969753  CTSH; cathepsin H [KO:K01366] [EC:3.4.22.16]
102968588  CTSK; cathepsin K [KO:K01371] [EC:3.4.22.38]
102950393  cathepsin L1 [KO:K01365] [EC:3.4.22.15]
102951600  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102972109  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102969590  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102970155  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
107178968  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102969290  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102968399  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102968987  cathepsin L1-like [KO:K01365] [EC:3.4.22.15]
102965401  CTSO; cathepsin O [KO:K01374] [EC:3.4.22.42]
102967913  CTSS; cathepsin S [KO:K01368] [EC:3.4.22.27]
102969506  CTSW; cathepsin W [KO:K08569] [EC:3.4.22.-]
102956771  CTSZ; cathepsin Z [KO:K08568] [EC:3.4.18.1]
102972419  BIRC2; baculoviral IAP repeat containing 2 [KO:K16060]
102951731  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
102957920  XIAP; X-linked inhibitor of apoptosis [KO:K04725] [EC:2.3.2.27]
102950505  BIRC5; baculoviral IAP repeat containing 5 [KO:K08731]
102956471  BCL2L11; BCL2 like 11 [KO:K16341]
102950221  BCL2L1; BCL2 like 1 [KO:K04570]
102953487  BCL2; BCL2, apoptosis regulator [KO:K02161]
102964459  RIPK1; receptor interacting serine/threonine kinase 1 [KO:K02861] [EC:2.7.11.1]
102964095  DAB2IP; DAB2 interacting protein [KO:K19901]
102960317  MAP3K5; mitogen-activated protein kinase kinase kinase 5 [KO:K04426] [EC:2.7.11.25]
102959159  MAPK10; mitogen-activated protein kinase 10 [KO:K04440] [EC:2.7.11.24]
102950880  MAPK8; mitogen-activated protein kinase 8 [KO:K04440] [EC:2.7.11.24]
102963096  MAPK9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
102956027  BAD; BCL2 associated agonist of cell death [KO:K02158]
102958666  JUN; Jun proto-oncogene, AP-1 transcription factor subunit [KO:K04448]
102952769  FOS; Fos proto-oncogene, AP-1 transcription factor subunit [KO:K04379]
102962571  TP53; tumor protein p53 [KO:K04451]
102964388  MAP3K14; mitogen-activated protein kinase kinase kinase 14 [KO:K04466] [EC:2.7.11.25]
102949289  CHUK; conserved helix-loop-helix ubiquitous kinase [KO:K04467] [EC:2.7.11.10]
102963734  IKBKB; inhibitor of nuclear factor kappa B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
102956127  NFKBIA; NFKB inhibitor alpha [KO:K04734]
102964232  NFKB1; nuclear factor kappa B subunit 1 [KO:K02580]
102951132  RELA; RELA proto-oncogene, NF-kB subunit [KO:K04735]
102958411  PTPN13; protein tyrosine phosphatase, non-receptor type 13 [KO:K02374]
102964763  GADD45B; growth arrest and DNA damage inducible beta [KO:K04402]
102951885  GADD45A; growth arrest and DNA damage inducible alpha [KO:K04402]
102961906  TRAF1; TNF receptor associated factor 1 [KO:K03172]
107178931  BCL2A1; BCL2 related protein A1 [KO:K02162]
102958898  ATM; ATM serine/threonine kinase [KO:K04728] [EC:2.7.11.1]
102948592  PIDD1; p53-induced death domain protein 1 [KO:K10130]
102955464  BBC3; BCL2 binding component 3 [KO:K10132]
102958923  PMAIP1; phorbol-12-myristate-13-acetate-induced protein 1 [KO:K10131]
102948856  CASP2; caspase 2 [KO:K02186] [EC:3.4.22.55]
102961057  NGF; nerve growth factor [KO:K02582]
102966236  CSF2RB; colony stimulating factor 2 receptor beta common subunit [KO:K04738]
102953082  PIK3CD; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta [KO:K00922] [EC:2.7.1.153]
102965070  PIK3CA; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha [KO:K00922] [EC:2.7.1.153]
102972487  PIK3CB; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta [KO:K00922] [EC:2.7.1.153]
102949853  PIK3R3; phosphoinositide-3-kinase regulatory subunit 3 [KO:K02649]
102952993  PIK3R1; phosphoinositide-3-kinase regulatory subunit 1 [KO:K02649]
102967709  PIK3R2; phosphoinositide-3-kinase regulatory subunit 2 [KO:K02649]
102960424  PDPK1; 3-phosphoinositide dependent protein kinase 1 [KO:K06276] [EC:2.7.11.1]
102952603  AKT3; AKT serine/threonine kinase 3 [KO:K04456] [EC:2.7.11.1]
102954757  AKT2; AKT serine/threonine kinase 2 [KO:K04456] [EC:2.7.11.1]
102952119  HRAS; HRas proto-oncogene, GTPase [KO:K02833]
102957350  KRAS; KRAS proto-oncogene, GTPase [KO:K07827]
102952980  NRAS; neuroblastoma RAS viral oncogene homolog [KO:K07828]
102955852  RAF1; Raf-1 proto-oncogene, serine/threonine kinase [KO:K04366] [EC:2.7.11.1]
102969757  MAP2K1; mitogen-activated protein kinase kinase 1 [KO:K04368] [EC:2.7.12.2]
102956808  MAP2K2; mitogen-activated protein kinase kinase 2 [KO:K04369] [EC:2.7.12.2]
102964841  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
102960964  MAPK3; mitogen-activated protein kinase 3 [KO:K04371] [EC:2.7.11.24]
Compound
C00027  Hydrogen peroxide
C00076  Calcium cation
C00319  Sphingosine
C05981  Phosphatidylinositol-3,4,5-trisphosphate
Reference
  Authors
Savitskaya MA, Onishchenko GE
  Title
Mechanisms of Apoptosis.
  Journal
Biochemistry (Mosc) 80:1393-417 (2015)
DOI:10.1134/S0006297915110012
Reference
  Authors
Schleich K, Lavrik IN
  Title
Mathematical modeling of apoptosis.
  Journal
Cell Commun Signal 11:44 (2013)
DOI:10.1186/1478-811X-11-44
Reference
  Authors
Lavrik I, Golks A, Krammer PH
  Title
Death receptor signaling.
  Journal
J Cell Sci 118:265-7 (2005)
DOI:10.1242/jcs.01610
Reference
  Authors
Jin Z, El-Deiry WS
  Title
Overview of cell death signaling pathways.
  Journal
Cancer Biol Ther 4:139-63 (2005)
DOI:10.4161/cbt.4.2.1508
Reference
  Authors
Benn SC, Woolf CJ
  Title
Adult neuron survival strategies--slamming on the brakes.
  Journal
Nat Rev Neurosci 5:686-700 (2004)
DOI:10.1038/nrn1477
Reference
  Authors
Orrenius S, Zhivotovsky B, Nicotera P
  Title
Regulation of cell death: the calcium-apoptosis link.
  Journal
Nat Rev Mol Cell Biol 4:552-65 (2003)
DOI:10.1038/nrm1150
Reference
  Authors
Clarke P, Tyler KL
  Title
Apoptosis in animal models of virus-induced disease.
  Journal
Nat Rev Microbiol 7:144-55 (2009)
DOI:10.1038/nrmicro2071
Reference
  Authors
Wen X, Lin ZQ, Liu B, Wei YQ
  Title
Caspase-mediated programmed cell death pathways as potential therapeutic targets in cancer.
  Journal
Cell Prolif 45:217-24 (2012)
DOI:10.1111/j.1365-2184.2012.00814.x
Reference
  Authors
Shalini S, Dorstyn L, Dawar S, Kumar S
  Title
Old, new and emerging functions of caspases.
  Journal
Cell Death Differ 22:526-39 (2015)
DOI:10.1038/cdd.2014.216
Reference
  Authors
Philchenkov A
  Title
Caspases: potential targets for regulating cell death.
  Journal
J Cell Mol Med 8:432-44 (2004)
DOI:10.1111/j.1582-4934.2004.tb00468.x
Reference
PMID:9894605
  Authors
Stroh C, Schulze-Osthoff K
  Title
Death by a thousand cuts: an ever increasing list of caspase substrates.
  Journal
Cell Death Differ 5:997-1000 (1998)
DOI:10.1038/sj.cdd.4400451
Reference
  Authors
Safa AR
  Title
c-FLIP, a master anti-apoptotic regulator.
  Journal
Exp Oncol 34:176-84 (2012)
Reference
  Authors
Jeong SY, Seol DW
  Title
The role of mitochondria in apoptosis.
  Journal
BMB Rep 41:11-22 (2008)
DOI:10.5483/bmbrep.2008.41.1.011
Reference
  Authors
Parsons MJ, Green DR
  Title
Mitochondria in cell death.
  Journal
Essays Biochem 47:99-114 (2010)
DOI:10.1042/bse0470099
Reference
  Authors
Strasser A
  Title
The role of BH3-only proteins in the immune system.
  Journal
Nat Rev Immunol 5:189-200 (2005)
DOI:10.1038/nri1568
Reference
  Authors
Schonthal AH
  Title
Endoplasmic reticulum stress: its role in disease and novel prospects for therapy.
  Journal
Scientifica (Cairo) 2012:857516 (2012)
DOI:10.6064/2012/857516
Reference
  Authors
Malhi H, Kaufman RJ
  Title
Endoplasmic reticulum stress in liver disease.
  Journal
J Hepatol 54:795-809 (2011)
DOI:10.1016/j.jhep.2010.11.005
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Wu J, Kaufman RJ
  Title
From acute ER stress to physiological roles of the Unfolded Protein Response.
  Journal
Cell Death Differ 13:374-84 (2006)
DOI:10.1038/sj.cdd.4401840
Reference
  Authors
Repnik U, Stoka V, Turk V, Turk B
  Title
Lysosomes and lysosomal cathepsins in cell death.
  Journal
Biochim Biophys Acta 1824:22-33 (2012)
DOI:10.1016/j.bbapap.2011.08.016
Reference
  Authors
Cesen MH, Pegan K, Spes A, Turk B
  Title
Lysosomal pathways to cell death and their therapeutic applications.
  Journal
Exp Cell Res 318:1245-51 (2012)
DOI:10.1016/j.yexcr.2012.03.005
Reference
  Authors
Dashzeveg N, Yoshida K
  Title
Cell death decision by p53 via control of the mitochondrial membrane.
  Journal
Cancer Lett 367:108-12 (2015)
DOI:10.1016/j.canlet.2015.07.019
Reference
  Authors
Bouchier-Hayes L, Green DR
  Title
Caspase-2: the orphan caspase.
  Journal
Cell Death Differ 19:51-7 (2012)
DOI:10.1038/cdd.2011.157
Reference
  Authors
Baptiste-Okoh N, Barsotti AM, Prives C
  Title
A role for caspase 2 and PIDD in the process of p53-mediated apoptosis.
  Journal
Proc Natl Acad Sci U S A 105:1937-42 (2008)
DOI:10.1073/pnas.0711800105
Reference
  Authors
Aggarwal BB
  Title
Signalling pathways of the TNF superfamily: a double-edged sword.
  Journal
Nat Rev Immunol 3:745-56 (2003)
DOI:10.1038/nri1184
Reference
  Authors
Steelman LS, Pohnert SC, Shelton JG, Franklin RA, Bertrand FE, McCubrey JA.
  Title
JAK/STAT, Raf/MEK/ERK, PI3K/Akt and BCR-ABL in cell cycle progression and leukemogenesis.
  Journal
Leukemia 18:189-218 (2004)
DOI:10.1038/sj.leu.2403241
Reference
PMID:9916983
  Authors
Dragovich T, Rudin CM, Thompson CB
  Title
Signal transduction pathways that regulate cell survival and cell death.
  Journal
Oncogene 17:3207-13 (1998)
DOI:10.1038/sj.onc.1202587
Reference
  Authors
Sofroniew MV, Howe CL, Mobley WC
  Title
Nerve growth factor signaling, neuroprotection, and neural repair.
  Journal
Annu Rev Neurosci 24:1217-81 (2001)
DOI:10.1146/annurev.neuro.24.1.1217
Reference
  Authors
Kristiansen M, Ham J
  Title
Programmed cell death during neuronal development: the sympathetic neuron model.
  Journal
Cell Death Differ 21:1025-35 (2014)
DOI:10.1038/cdd.2014.47
Reference
  Authors
Logue SE, Martin SJ
  Title
Caspase activation cascades in apoptosis.
  Journal
Biochem Soc Trans 36:1-9 (2008)
DOI:10.1042/BST0360001
Reference
  Authors
Boivin WA, Cooper DM, Hiebert PR, Granville DJ
  Title
Intracellular versus extracellular granzyme B in immunity and disease: challenging the dogma.
  Journal
Lab Invest 89:1195-220 (2009)
DOI:10.1038/labinvest.2009.91
Reference
  Authors
Cullen SP, Brunet M, Martin SJ
  Title
Granzymes in cancer and immunity.
  Journal
Cell Death Differ 17:616-23 (2010)
DOI:10.1038/cdd.2009.206
Related
pathway
ptg04010  MAPK signaling pathway
ptg04020  Calcium signaling pathway
ptg04064  NF-kappa B signaling pathway
ptg04115  p53 signaling pathway
ptg04141  Protein processing in endoplasmic reticulum
ptg04151  PI3K-Akt signaling pathway
ptg04650  Natural killer cell mediated cytotoxicity
ptg04668  TNF signaling pathway
KO pathway
ko04210   
LinkDB

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