KEGG   PATHWAY: salg03030
Entry
salg03030                   Pathway                                
Name
DNA replication - Shewanella algae
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
salg03030  DNA replication
salg03030

Organism
Shewanella algae [GN:salg]
Gene
BS332_17405  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BS332_16530  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BS332_21925  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
BS332_21120  hypothetical protein [KO:K02343] [EC:2.7.7.7]
BS332_19390  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
BS332_01950  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
BS332_02120  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
BS332_07285  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BS332_01415  DNA primase [KO:K02316] [EC:2.7.7.101]
BS332_04170  single-stranded DNA-binding protein [KO:K03111]
BS332_22535  single-stranded DNA-binding protein [KO:K03111]
BS332_17400  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
BS332_00545  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
BS332_07520  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
BS332_16475  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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