KEGG   PATHWAY: sce04141
Entry
sce04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Saccharomyces cerevisiae (budding yeast)
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
sce04141  Protein processing in endoplasmic reticulum
sce04141

Other DBs
GO: 0030433 0034976
Organism
Saccharomyces cerevisiae (budding yeast) [GN:sce]
Gene
YLR378C  SEC61; translocon subunit SEC61 [KO:K10956]
YBR283C  SSH1; Ssh1p [KO:K10956]
YER087C-B  SBH1; Arf family guanine nucleotide exchange factor SBH1 [KO:K09481]
YER019C-A  SBH2; Arf family guanine nucleotide exchange factor SBH2 [KO:K09481]
YDR086C  SSS1; translocon subunit SSS1 [KO:K07342]
YPL094C  SEC62; Sec63 complex subunit SEC62 [KO:K12275]
YOR254C  SEC63; protein-transporting protein SEC63 [KO:K09540]
YJL002C  OST1; dolichyl-diphosphooligosaccharide--protein glycotransferase subunit OST1 [KO:K12666]
YMR149W  SWP1; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12667]
YOR103C  OST2; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12668]
YML019W  OST6; dolichyl-diphosphooligosaccharide--protein glycotransferase [KO:K12669]
YOR085W  OST3; dolichyl-diphosphooligosaccharide--protein glycotransferase OST3 [KO:K12669]
YEL002C  WBP1; dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12670]
YDL232W  OST4; olichyl-diphosphooligosaccharide--protein glycotransferase OST4 [KO:K00730]
YGL226C-A  OST5; dolichyl-diphosphooligosaccharide--protein glycotransferase subunit [KO:K12691]
YGL022W  STT3; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 [KO:K07151] [EC:2.4.99.18]
YGL027C  CWH41; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
YOL031C  SIL1; Sil1p [KO:K14001]
YKL073W  LHS1; Hsp70 family chaperone LHS1 [KO:K09486]
YJL034W  KAR2; Hsp70 family ATPase KAR2 [KO:K09490] [EC:3.6.4.10]
YJL073W  JEM1; Jem1p [KO:K09523]
YMR214W  SCJ1; Scj1p [KO:K14002]
YBR229C  ROT2; glucan 1,3-alpha-glucosidase ROT2 [KO:K05546] [EC:3.2.1.207]
YDR221W  GTB1; Gtb1p [KO:K08288]
YAL058W  CNE1; calnexin [KO:K08054]
YLR057W  MNL2; putative mannosidase MNL2 [KO:K01230] [EC:3.2.1.113]
YJR131W  MNS1; mannosyl-oligosaccharide 1,2-alpha-mannosidase [KO:K23741] [EC:3.2.1.209]
YLR080W  EMP46; Emp46p [KO:K10080]
YFL048C  EMP47; Emp47p [KO:K10080]
YCR067C  SED4; GTPase-activating protein SED4 [KO:K14003]
YNR026C  SEC12; Sar family guanine nucleotide exchange factor SEC12 [KO:K14003]
YPL218W  SAR1; Arf family GTPase SAR1 [KO:K07953] [EC:3.6.5.-]
YLR208W  SEC13; GTPase-activating protein SEC13 [KO:K14004]
YDL195W  SEC31; Sec31p [KO:K14005]
YPR181C  SEC23; GTPase-activating protein SEC23 [KO:K14006]
YIL109C  SEC24; COPII subunit SEC24 [KO:K14007]
YHR098C  SFB3; Sfb3p [KO:K14007]
YNL049C  SFB2; COPII subunit SFB2 [KO:K14007]
YOR336W  KRE5; Kre5p [KO:K11718] [EC:2.4.1.-]
YCL043C  PDI1; protein disulfide isomerase PDI1 [KO:K09580] [EC:5.3.4.1]
YDR518W  EUG1; protein disulfide isomerase EUG1 [KO:K09580] [EC:5.3.4.1]
YOR288C  MPD1; protein disulfide isomerase MPD1 [KO:K09584] [EC:5.3.4.1]
YIL005W  EPS1; protein disulfide isomerase EPS1 [KO:K13996] [EC:5.3.4.1]
YML130C  ERO1; ER oxidoreductin [KO:K10976] [EC:1.8.4.-]
YDR057W  YOS9; Yos9p [KO:K10088]
YDL072C  YET3; Yet3p [KO:K14009]
YBR201W  DER1; derlin [KO:K13989]
YDR411C  DFM1; Dfm1p [KO:K13989]
YBR273C  UBX7; Ubx7p [KO:K24348]
YBL058W  SHP1; protein phosphatase regulator SHP1 [KO:K14012]
YML013W  UBX2; Ubx2p [KO:K14013]
YDL126C  CDC48; AAA family ATPase CDC48 [KO:K13525]
YBR170C  NPL4; nuclear protein localization protein 4 [KO:K14015]
YGR048W  UFD1; polyubiquitin-binding protein UFD1 [KO:K14016]
YLL024C  SSA2; Hsp70 family chaperone SSA2 [KO:K03283]
YAL005C  SSA1; Hsp70 family ATPase SSA1 [KO:K03283]
YER103W  SSA4; Hsp70 family chaperone SSA4 [KO:K03283]
YBL075C  SSA3; Hsp70 family ATPase SSA3 [KO:K03283]
YNL209W  SSB2; Hsp70 family ATPase SSB2 [KO:K03283]
YDL229W  SSB1; Hsp70 family ATPase SSB1 [KO:K03283]
YNL064C  YDJ1; type I HSP40 co-chaperone YDJ1 [KO:K09503]
YLR090W  XDJ1; Xdj1p [KO:K09503]
YNL077W  APJ1; Apj1p [KO:K09503]
YMR161W  HLJ1; type I HSP40 co-chaperone HLJ1 [KO:K09518]
YPL240C  HSP82; Hsp90 family chaperone HSP82 [KO:K04079]
YMR186W  HSC82; Hsp90 family chaperone HSC82 [KO:K04079]
YBR169C  SSE2; adenyl-nucleotide exchange factor SSE2 [KO:K09485]
YPL106C  SSE1; adenyl-nucleotide exchange factor SSE1 [KO:K09485]
YBR101C  FES1; Hsp70 nucleotide exchange factor FES1 [KO:K09562]
YIL016W  SNL1; Snl1p [KO:K14017]
YBR072W  HSP26; chaperone protein HSP26 [KO:K13993]
YDR171W  HSP42; heat shock protein HSP42 [KO:K13993]
YFL044C  OTU1; ubiquitin-specific protease OTU1 [KO:K13719] [EC:3.1.2.-]
YKL213C  DOA1; Doa1p [KO:K14018]
YEL037C  RAD23; Rad23p [KO:K10839]
YMR276W  DSK2; ubiquitin domain-containing protein DSK2 [KO:K04523]
YPL096W  PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase [KO:K01456] [EC:3.5.1.52]
YDL190C  UFD2; ubiquitin-ubiquitin ligase UFD2 [KO:K10597] [EC:2.3.2.27]
YJR007W  SUI2; translation initiation factor eIF2 subunit alpha [KO:K03237]
YHR079C  IRE1; bifunctional endoribonuclease/protein kinase IRE1 [KO:K08852] [EC:2.7.11.1 3.1.26.-]
YIL030C  SSM4; E3 ubiquitin-protein ligase SSM4 [KO:K10661] [EC:2.3.2.27]
YER100W  UBC6; E2 ubiquitin-conjugating protein UBC6 [KO:K04554] [EC:2.3.2.23]
YMR022W  UBC7; E2 ubiquitin-conjugating protein UBC7 [KO:K04555] [EC:2.3.2.23]
YMR264W  CUE1; Cue1p [KO:K14022]
YLR207W  HRD3; ubiquitin ligase complex subunit HRD3 [KO:K14023]
YOL013C  HRD1; E3 ubiquitin-protein ligase HRD1 [KO:K10601] [EC:2.3.2.27]
YML029W  USA1; Usa1p [KO:K14024]
YDR059C  UBC5; E2 ubiquitin-conjugating protein UBC5 [KO:K06689] [EC:2.3.2.23]
YBR082C  UBC4; E2 ubiquitin-conjugating protein UBC4 [KO:K06689] [EC:2.3.2.23]
YOL133W  HRT1; SCF ubiquitin ligase complex subunit HRT1 [KO:K03868] [EC:2.3.2.32]
YDL132W  CDC53; cullin CDC53 [KO:K03347]
YDR328C  SKP1; SCF ubiquitin ligase subunit SKP1 [KO:K03094]
Compound
C00076  Calcium cation
G00009   
G00010   
G00011   
G00012   
G10694   
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
sce00510  N-Glycan biosynthesis
sce03050  Proteasome
sce03060  Protein export
KO pathway
ko04141   
LinkDB

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