Entry
Name
Autophagy - animal - Seriola dumerili (greater amberjack)
Description
Autophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily conserved among eukaryotes and exquisitely regulated. This progress initiates with production of the autophagosome, a double-membrane intracellular structure of reticular origin that engulfs cytoplasmic contents and ultimately fuses with lysosomes for cargo degradation. Autophagy is regulated in response to extra- or intracellular stress and signals such as starvation, growth factor deprivation and ER stress. Constitutive level of autophagy plays an important role in cellular homeostasis and maintains quality control of essential cellular components.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Seriola dumerili (greater amberjack) [GN:
sdu ]
Gene
111216431 pik3ca; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform [KO:K00922 ] [EC:2.7.1.153 ]
111219094 pik3cd; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform [KO:K00922 ] [EC:2.7.1.153 ]
111236831 phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform-like [KO:K00922 ] [EC:2.7.1.153 ]
111232818 pik3cb; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform [KO:K00922 ] [EC:2.7.1.153 ]
111239022 pik3r1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
111227486 pik3r3; phosphatidylinositol 3-kinase regulatory subunit gamma isoform X1 [KO:K02649 ]
111236942 phosphatidylinositol 3-kinase regulatory subunit alpha-like isoform X1 [KO:K02649 ]
111228846 phosphatidylinositol 3-kinase regulatory subunit gamma-like isoform X1 [KO:K02649 ]
111228984 phosphatidylinositol 3-kinase regulatory subunit gamma-like isoform X1 [KO:K02649 ]
111235342 phosphatidylinositol 3-kinase regulatory subunit gamma-like [KO:K02649 ]
111225342 hif1a; LOW QUALITY PROTEIN: hypoxia-inducible factor 1-alpha [KO:K08268 ]
111239883 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15464 ]
111235195 bnip3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464 ]
111227677 deptor; DEP domain-containing mTOR-interacting protein isoform X1 [KO:K20402 ]
111226526 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform-like isoform X1 [KO:K04382 ] [EC:3.1.3.16 ]
111234362 ppp2ca; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382 ] [EC:3.1.3.16 ]
111231008 rb1cc1; RB1-inducible coiled-coil protein 1 isoform X1 [KO:K17589 ]
111232476 atg2a; autophagy-related protein 2 homolog A isoform X1 [KO:K17906 ]
111225644 atg2b; autophagy-related protein 2 homolog B isoform X1 [KO:K17906 ]
111219550 wipi1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908 ]
111236271 WD repeat domain phosphoinositide-interacting protein 1-like isoform X1 [KO:K17908 ]
111230321 wipi2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908 ]
111220408 wdr45b; WD repeat domain phosphoinositide-interacting protein 3 [KO:K22991 ]
111224270 wdr45; WD repeat domain phosphoinositide-interacting protein 4 [KO:K22991 ]
111217176 supt20h; transcription factor SPT20 homolog isoform X1 [KO:K21245 ]
111216673 guanine nucleotide exchange protein smcr8a-like isoform X1 [KO:K23611 ]
111226191 cunh9orf72; guanine nucleotide exchange C9orf72 homolog [KO:K23609 ]
111218840 tank; TRAF family member-associated NF-kappa-B activator [KO:K12650 ]
111237164 atg14; beclin 1-associated autophagy-related key regulator [KO:K17889 ]
111233714 ambra1; activating molecule in BECN1-regulated autophagy protein 1 isoform X1 [KO:K17985 ]
111219313 tp53inp2; tumor protein p53-inducible nuclear protein 2 isoform X1 [KO:K21247 ]
111222367 uvrag; UV radiation resistance-associated gene protein [KO:K21249 ]
111216331 rubcn; run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1 [KO:K19330 ]
111235659 eif2s1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237 ]
111224855 gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
111238835 gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
111233024 gabarap; gamma-aminobutyric acid receptor-associated protein [KO:K08341 ]
111230109 gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341 ]
111219463 map1lc3a; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435 ]
111232964 map1lc3c; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435 ]
111232381 microtubule-associated proteins 1A/1B light chain 3C-like [KO:K10435 ]
111231992 atg4b; cysteine protease ATG4B isoform X1 [KO:K08342 ] [EC:3.4.22.-]
111219974 calcoco2; calcium-binding and coiled-coil domain-containing protein 2 isoform X1 [KO:K21348 ]
111227988 wdfy3; WD repeat and FYVE domain-containing protein 3 [KO:K22262 ]
111224188 rps27a; ubiquitin-40S ribosomal protein S27a isoform X1 [KO:K02977 ]
111239031 vesicle-associated membrane protein 8-like isoform X1 [KO:K08512 ]
111220282 plekhm1; pleckstrin homology domain-containing family M member 1 isoform X1 [KO:K23282 ]
111222366 vps11; vacuolar protein sorting-associated protein 11 homolog [KO:K20179 ]
111235574 vps16; vacuolar protein sorting-associated protein 16 homolog [KO:K20180 ]
111216444 vps18; vacuolar protein sorting-associated protein 18 homolog [KO:K20181 ]
111228751 vps33a; vacuolar protein sorting-associated protein 33A [KO:K20182 ]
111237842 vps41; vacuolar protein sorting-associated protein 41 homolog [KO:K20184 ]
111232692 lamp2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
Compound
C00350 Phosphatidylethanolamine
C01194 1-Phosphatidyl-D-myo-inositol
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
Reference
Authors
Meijer AJ, Codogno P.
Title
Regulation and role of autophagy in mammalian cells.
Journal
Reference
Authors
Deretic V.
Title
Autophagy in innate and adaptive immunity.
Journal
Reference
Authors
Levine B, Yuan J.
Title
Autophagy in cell death: an innocent convict?
Journal
Reference
Authors
Tanida I, Ueno T, Kominami E.
Title
LC3 conjugation system in mammalian autophagy.
Journal
Reference
Authors
Lum JJ, DeBerardinis RJ, Thompson CB.
Title
Autophagy in metazoans: cell survival in the land of plenty.
Journal
Reference
Authors
Reggiori F, Klionsky DJ.
Title
Autophagosomes: biogenesis from scratch?
Journal
Reference
Authors
Klionsky DJ, Emr SD.
Title
Autophagy as a regulated pathway of cellular degradation.
Journal
Reference
Authors
Bechet D, Tassa A, Taillandier D, Combaret L, Attaix D.
Title
Lysosomal proteolysis in skeletal muscle.
Journal
Reference
Authors
He C, Klionsky DJ
Title
Regulation mechanisms and signaling pathways of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
An overview of the molecular mechanism of autophagy.
Journal
Reference
Authors
Yang Z, Klionsky DJ
Title
Mammalian autophagy: core molecular machinery and signaling regulation.
Journal
Reference
Authors
Chen Y, Klionsky DJ
Title
The regulation of autophagy - unanswered questions.
Journal
Reference
Authors
Mizushima N, Yoshimori T, Ohsumi Y
Title
The role of Atg proteins in autophagosome formation.
Journal
Reference
Authors
Russell RC, Yuan HX, Guan KL
Title
Autophagy regulation by nutrient signaling.
Journal
Reference
Authors
Noda NN, Fujioka Y
Title
Atg1 family kinases in autophagy initiation.
Journal
Related pathway
sdu04141 Protein processing in endoplasmic reticulum
KO pathway
LinkDB
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