KEGG   PATHWAY: sfg00030
Entry
sfg00030                    Pathway                                
Name
Pentose phosphate pathway - Serratia fonticola GS2
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfg00030  Pentose phosphate pathway
sfg00030

Module
sfg_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:sfg00030]
sfg_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sfg00030]
sfg_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:sfg00030]
sfg_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sfg00030]
sfg_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sfg00030]
sfg_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:sfg00030]
sfg_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:sfg00030]
Other DBs
GO: 0006098
Organism
Serratia fonticola GS2 [GN:sfg]
Gene
AV650_00855  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AV650_27695  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AV650_26380  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
AV650_26385  glucose-6-phosphate isomerase [KO:K06859] [EC:5.3.1.9]
AV650_18440  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AV650_01965  epimerase [KO:K19243] [EC:1.1.1.388]
AV650_11450  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AV650_00310  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AV650_27150  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AV650_12775  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AV650_04765  ribulose phosphate epimerase [KO:K01783] [EC:5.1.3.1]
AV650_21375  transketolase [KO:K00615] [EC:2.2.1.1]
AV650_21380  carbohydrate degradation protein [KO:K00615] [EC:2.2.1.1]
AV650_25275  transketolase [KO:K00615] [EC:2.2.1.1]
AV650_17805  transketolase [KO:K00615] [EC:2.2.1.1]
AV650_17810  transketolase [KO:K00615] [EC:2.2.1.1]
AV650_22845  transaldolase [KO:K00616] [EC:2.2.1.2]
AV650_07295  transaldolase [KO:K00616] [EC:2.2.1.2]
AV650_25125  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
AV650_22840  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
AV650_06880  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AV650_12900  2-deoxyribose-5-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AV650_03125  ribokinase [KO:K00852] [EC:2.7.1.15]
AV650_06890  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AV650_11110  phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
AV650_06100  ribose-phosphate pyrophosphokinase [KO:K05774] [EC:2.7.4.23]
AV650_04965  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AV650_18775  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AV650_00940  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
AV650_27780  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
AV650_18435  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AV650_18400  4-hydroxy-2-ketovalerate aldolase [KO:K17463] [EC:4.1.2.14]
AV650_17365  gluconolactonase [KO:K01053] [EC:3.1.1.17]
AV650_15230  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
AV650_14855  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
AV650_15225  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
AV650_14860  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
AV650_02805  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AV650_04510  idnK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
AV650_00935  gntK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
AV650_27775  gntK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
AV650_04195  ketodeoxygluconokinase [KO:K00874] [EC:2.7.1.45]
AV650_02795  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
AV650_18425  PTS fructose transporter subunit IIA [KO:K17464] [EC:2.7.1.203]
AV650_18420  PTS sugar transporter [KO:K17465] [EC:2.7.1.203]
AV650_18415  PTS sorbose transporter subunit IIC [KO:K17466]
AV650_18410  PTS fructose transporter subunit IID [KO:K17467]
AV650_26390  PTS fructose transporter subunit IID [KO:K17467]
AV650_18405  selenocysteine synthase [KO:K17468] [EC:4.3.1.29]
AV650_23230  fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
AV650_24190  kbaY; tagatose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
AV650_25170  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
AV650_05830  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
AV650_03905  fructose 1,6-bisphosphatase [KO:K02446] [EC:3.1.3.11]
AV650_03865  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sfg00010  Glycolysis / Gluconeogenesis
sfg00040  Pentose and glucuronate interconversions
sfg00052  Galactose metabolism
sfg00230  Purine metabolism
sfg00240  Pyrimidine metabolism
sfg00340  Histidine metabolism
sfg00630  Glyoxylate and dicarboxylate metabolism
sfg00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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