KEGG   PATHWAY: sfv00010
Entry
sfv00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Shigella flexneri 8401 (serotype 5b)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfv00010  Glycolysis / Gluconeogenesis
sfv00010

Module
sfv_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:sfv00010]
sfv_M00002  Glycolysis, core module involving three-carbon compounds [PATH:sfv00010]
sfv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfv00010]
sfv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfv00010]
Other DBs
GO: 0006096 0006094
Organism
Shigella flexneri 8401 (serotype 5b) [GN:sfv]
Gene
SFV_2446  glk; glucokinase [KO:K00845] [EC:2.7.1.2]
SFV_4188  pgi; glucosephosphate isomerase [KO:K01810] [EC:5.3.1.9]
SFV_3578  pfkA; 6-phosphofructokinase I [KO:K00850] [EC:2.7.1.11]
SFV_1498  pfkB; 6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
SFV_4259  fbp; fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
SFV_3996  glpX; unknown function in glycerol metabolism [KO:K02446] [EC:3.1.3.11]
SFV_2982  yggF; conserved hypothetical protein [KO:K02446] [EC:3.1.3.11]
SFV_2152  conserved hypothetical protein [KO:K11645] [EC:4.1.2.13]
SFV_2971  fba; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
SFV_3575  tpiA; triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
SFV_1436  gapA; glyceraldehyde-3-phosphate dehydrogenase A [KO:K00134] [EC:1.2.1.12]
SFV_1790  gapC; Glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
SFV_2972  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
SFV_0585  gpmA; phosphoglyceromutase 1 [KO:K01834] [EC:5.4.2.11]
SFV_4429  gpmB; phosphoglyceromutase 2 [KO:K15634] [EC:5.4.2.11]
SFV_3917  yibO; putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
SFV_2676  eno; enolase [KO:K01689] [EC:4.2.1.11]
SFV_1699  pykF; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
SFV_1856  pykA; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
SFV_1522  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
SFV_0105  aceE; pyruvate dehydrogenase (decarboxylase component) [KO:K00163] [EC:1.2.4.1]
SFV_0106  aceF; pyruvate dehydrogenase (dihydrolipoyltransacetylase component) [KO:K00627] [EC:2.3.1.12]
SFV_0107  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SFV_1811  ydbK; putative oxidoreductase, Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
SFV_1253  adhE; CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
SFV_3944  yiaY; putative oxidoreductase [KO:K13954] [EC:1.1.1.1]
SFV_4229  yjgB; putative oxidoreductase [KO:K12957] [EC:1.1.1.2 1.1.1.183]
SFV_3945  aldB; aldehyde dehydrogenase B [KO:K00138] [EC:1.2.1.-]
SFV_4142  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
SFV_0584  galM; galactose-1-epimerase [KO:K01785] [EC:5.1.3.3]
SFV_3620  yihR; putative aldose-1-epimerase [KO:K01785] [EC:5.1.3.3]
SFV_2592  yphB; conserved hypothetical protein [KO:K01785] [EC:5.1.3.3]
SFV_1014  agp; periplasmic glucose-1-phosphatase [KO:K01085] [EC:3.1.3.10]
SFV_3614  yihX; putative phosphatase [KO:K20866] [EC:3.1.3.10]
SFV_0643  pgm; phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
SFV_1435  yeaD; conserved hypothetical protein [KO:K01792] [EC:5.1.3.15]
SFV_3408  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SFV_1486  celF; phospho-beta-glucosidase; cryptic [KO:K01222] [EC:3.2.1.86]
SFV_3786  bglB; phospho-beta-glucosidase B; cryptic [KO:K01223] [EC:3.2.1.86]
SFV_2789  ascB; 6-phospho-beta-glucosidase; cryptic [KO:K01223] [EC:3.2.1.86]
SFV_2949  bglA; 6-phospho-beta-glucosidase A [KO:K01223] [EC:3.2.1.86]
SFV_2469  crr; PTS system, glucose-specific IIA component [KO:K02777] [EC:2.7.1.-]
SFV_1121  ptsG; PTS system, glucose-specific IIBC component [KO:K02779] [EC:2.7.1.199]
SFV_1638  malX; PTS system, maltose and glucose-specific II ABC [KO:K02791] [EC:2.7.1.199 2.7.1.208]
SFV_2790  ascF; PTS family enzyme IIBC component, cellobiose/salicin/arbutin-specific [KO:K02753] [EC:2.7.1.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfv00020  Citrate cycle (TCA cycle)
sfv00030  Pentose phosphate pathway
sfv00500  Starch and sucrose metabolism
sfv00620  Pyruvate metabolism
sfv00640  Propanoate metabolism
sfv00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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