KEGG   PATHWAY: sluc04622
Entry
sluc04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Sander lucioperca (pikeperch)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
sluc04622  RIG-I-like receptor signaling pathway
sluc04622

Organism
Sander lucioperca (pikeperch) [GN:sluc]
Gene
116049100  ifih1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
116051399  znfx1; NFX1-type zinc finger-containing protein 1 isoform X2 [KO:K27391]
116057503  polycystic kidney disease protein 1-like 3 [KO:K12648]
116057504  mitochondrial antiviral-signaling protein-like [KO:K12648]
116059727  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
116065150  traf3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
116049137  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
116035288  azi2; 5-azacytidine-induced protein 2 isoform X2 [KO:K12651]
116061286  tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
116062908  TANK-binding kinase 1-binding protein 1-like isoform X3 [KO:K12652]
116040658  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
116034681  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
116066925  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon isoform X1 [KO:K07211] [EC:2.7.11.10]
116061477  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
116038367  irf7; interferon regulatory factor 7 [KO:K09447]
116061515  interferon a3-like isoform X1 [KO:K05414]
116061516  interferon a3-like isoform X1 [KO:K05414]
116055130  ifnphi1; interferon phi 1 [KO:K05414]
116035211  interferon a3-like [KO:K05414]
116060649  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
116045235  fadd; protein FADD [KO:K02373]
116046027  ripk1l; receptor-interacting serine/threonine-protein kinase 1 isoform X1 [KO:K02861] [EC:2.7.11.1]
116055058  caspase-8-like [KO:K04398] [EC:3.4.22.61]
116055079  casp8; caspase-8 [KO:K04398] [EC:3.4.22.61]
116048004  casp10; caspase-8 isoform X1 [KO:K04398] [EC:3.4.22.61]
116060936  inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]
116053123  inhibitor of nuclear factor kappa-B kinase subunit alpha-like isoform X1 [KO:K04467] [EC:2.7.11.10]
116054000  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
116041969  NF-kappa-B inhibitor alpha-like [KO:K04734]
116065706  nfkbiab; nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b isoform X1 [KO:K04734]
116058049  nfkb1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
116036053  rela; transcription factor p65 isoform X1 [KO:K04735]
116050408  TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]
116062912  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
116034969  traf2b; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
116040316  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
116065811  mitogen-activated protein kinase kinase kinase 7-like [KO:K04427] [EC:2.7.11.25]
116043440  traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
116053441  mapk8a; mitogen-activated protein kinase 8 isoform X6 [KO:K04440] [EC:2.7.11.24]
116063029  mapk10; mitogen-activated protein kinase 10 isoform X10 [KO:K04440] [EC:2.7.11.24]
116064329  mapk9; mitogen-activated protein kinase 9 [KO:K04440] [EC:2.7.11.24]
116048711  mapk8b; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
116067450  mapk14b; mitogen-activated protein kinase 14B isoform X1 [KO:K04441] [EC:2.7.11.24]
116038647  mapk12a; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
116054782  mapk11; mitogen-activated protein kinase 11 isoform X1 [KO:K04441] [EC:2.7.11.24]
116054783  mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]
116040750  mapk14a; mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
116040793  zgc:171775; STKc_p38 domain-containing protein isoform X1 [KO:K04441] [EC:2.7.11.24]
116040932  mapk13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
116053397  growth-regulated alpha protein-like [KO:K10030]
116053408  cxcl19; C-X-C motif chemokine 19 [KO:K10030]
116040543  interleukin-8-like [KO:K10030]
116040544  permeability factor 2-like isoform X1 [KO:K10030]
116040469  C-X-C motif chemokine 10-like [KO:K10030]
116041411  tumor necrosis factor ligand superfamily member 15 [KO:K03156]
116035910  tumor necrosis factor-like [KO:K03156]
116050803  il12a; interleukin-12 subunit alpha [KO:K05406]
116037408  interleukin-12 subunit alpha-like [KO:K05406]
116052081  il12ba; interleukin 12Ba [KO:K05425]
116036907  il12bb; interleukin-12 subunit beta isoform X1 [KO:K05425]
116054264  si:dkey-88e18.2; interleukin-12 subunit beta [KO:K05425]
116049564  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
116042551  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
116053304  zgc:92594; tripartite motif-containing protein 55 isoform X1 [KO:K10652] [EC:2.3.2.27]
116062289  E3 ubiquitin-protein ligase TRIM39 [KO:K10652] [EC:2.3.2.27]
116038932  ftr86; finTRIM family, member 86 isoform X4 [KO:K10652] [EC:2.3.2.27]
116039606  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X4 [KO:K10652] [EC:2.3.2.27]
116039609  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
116040751  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
116035889  cyldb; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
116053248  si:cabz01101003.1; ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
116037555  cylda; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
116038172  cyldl; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
116049096  atg5; autophagy protein 5 [KO:K08339]
116049679  atg12; ubiquitin-like protein ATG12 [KO:K08336]
116034643  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
116036524  sting1; stimulator of interferon genes protein [KO:K12654]
116045458  otud5a; OTU domain-containing protein 5-A isoform X1 [KO:K12655] [EC:3.4.19.12]
116040993  sike1; suppressor of IKBKE 1 [KO:K12656]
116050622  ddx3xa; DEAD-box helicase 3 X-linked a isoform X2 [KO:K11594] [EC:5.6.2.7]
116044720  ddx3xb; DEAD-box helicase 3 X-linked b isoform X1 [KO:K11594] [EC:5.6.2.7]
116042568  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
116053149  tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
sluc04010  MAPK signaling pathway
sluc04120  Ubiquitin mediated proteolysis
sluc04210  Apoptosis
KO pathway
ko04622   
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