KEGG   PATHWAY: tros04146
Entry
tros04146                   Pathway                                
Name
Peroxisome - Triplophysa rosa
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
tros04146  Peroxisome
tros04146

Other DBs
GO: 0005777
Organism
Triplophysa rosa [GN:tros]
Gene
130563190  pex16; peroxisomal biogenesis factor 16 [KO:K13335]
130565994  pex3; peroxisomal biogenesis factor 3 [KO:K13336]
130554220  pex19; peroxisomal biogenesis factor 19 [KO:K13337]
130547085  abcd3a; ATP-binding cassette sub-family D member 3a isoform X1 [KO:K05677] [EC:7.6.2.4]
130554330  abcd3b; ATP-binding cassette sub-family D member 3b [KO:K05677] [EC:7.6.2.4]
130567337  pex1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
130548517  pex6; peroxisomal ATPase PEX6 isoform X1 [KO:K13339]
130547937  pex26; peroxisome assembly protein 26 [KO:K13340]
130566127  pex7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
130558454  pex5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
130554483  pex5lb; PEX5-related protein isoform X1 [KO:K13342]
130556295  pex5la; PEX5-related protein isoform X1 [KO:K13342]
130545367  pex14; peroxisomal membrane protein PEX14 [KO:K13343]
130560715  pex13; peroxisome biogenesis factor 13 [KO:K13344]
130567708  pex12; peroxisome assembly protein 12 [KO:K13345]
130549596  pex10; peroxisome biogenesis factor 10 [KO:K13346]
130546973  pex2; peroxisome biogenesis factor 2 [KO:K06664]
130548781  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
130554679  mpv17l2; mpv17-like protein 2 [KO:K13348]
130566128  mpv17; protein Mpv17 isoform X1 [KO:K13348]
130558334  si:ch211-120k19.1; mpv17-like protein [KO:K13349]
130561898  mpv17l; LOW QUALITY PROTEIN: mpv17-like protein [KO:K13349]
130556932  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
130562922  pex11a; peroxisomal membrane protein 11A [KO:K13351]
130566972  pex11b; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
130571380  pex11g; peroxisomal membrane protein 11C [KO:K13353]
130561667  slc25a17; peroxisomal membrane protein PMP34 [KO:K13354]
130562114  slc25a17l; peroxisomal membrane protein PMP34 [KO:K13354]
130557861  hacl1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
130570067  amacr; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
130547946  phyh; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
130559055  acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
130554430  acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
130567576  hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
130554421  scp2a; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
130556176  ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
130547381  acaa1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
130547410  decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
130565112  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [KO:K12663] [EC:5.3.3.21]
130565113  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [KO:K12663] [EC:5.3.3.21]
130567644  abcd1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
130548139  ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
130546926  abcd4; ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
130551645  zgc:101540; hsFATP2a_ACSVL_like domain-containing protein [KO:K08746] [EC:6.2.1.- 6.2.1.3]
130551835  slc27a2b; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
130544921  acsl4b; long-chain-fatty-acid--CoA ligase 4b [KO:K01897] [EC:6.2.1.3]
130563800  acsl4a; long-chain-fatty-acid--CoA ligase 4 [KO:K01897] [EC:6.2.1.3]
130564064  acsl1b; long-chain-fatty-acid--CoA ligase 1b [KO:K01897] [EC:6.2.1.3]
130569797  acsl6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
130552813  acsl1a; long-chain-fatty-acid--CoA ligase 1a isoform X1 [KO:K01897] [EC:6.2.1.3]
130565114  acsl3a; long-chain-fatty-acid--CoA ligase 3a [KO:K01897] [EC:6.2.1.3]
130554554  acsl3b; long-chain-fatty-acid--CoA ligase 3b [KO:K01897] [EC:6.2.1.3]
130567909  acsl2; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
130568801  acsl5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
130571293  pecr; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
130546969  eci2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
130551987  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
130567579  nudt12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
130569103  nudt13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
130560648  nudt19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
130571306  acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
130567399  cratb; carnitine O-acetyltransferase b [KO:K00624] [EC:2.3.1.7]
130568090  zgc:154046; carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
130549615  crata; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
130557622  crot; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
130563126  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
130566312  gnpat; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
130566393  gnpat2; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
130555471  agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
130551850  far1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
130547884  si:dkey-97m3.1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
130550373  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
130550264  mvk; mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
130557716  pmvk; phosphomevalonate kinase isoform X1 [KO:K13273] [EC:2.7.4.2]
130554847  agxtb; alanine--glyoxylate and serine--pyruvate aminotransferase b [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
130551094  agxta; alanine--glyoxylate and serine--pyruvate aminotransferase a [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
130564729  D-amino-acid oxidase-like isoform X1 [KO:K00273] [EC:1.4.3.3]
130564745  D-amino-acid oxidase-like [KO:K00273] [EC:1.4.3.3]
130559894  ddo; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
130555516  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
130563111  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
130559126  paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
130565132  pipox; peroxisomal sarcosine oxidase isoform X1 [KO:K00306] [EC:1.5.3.1 1.5.3.7]
130559006  hmgcll1; 3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
130560742  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
130560374  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
130555871  hao2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
130552052  catalase [KO:K03781] [EC:1.11.1.6]
130552079  catalase-like [KO:K03781] [EC:1.11.1.6]
130569941  prdx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
130545983  sod1; superoxide dismutase [Cu-Zn] isoform X1 [KO:K04565] [EC:1.15.1.1]
130565893  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
130570441  nos2a; nitric oxide synthase 2a, inducible [KO:K13241] [EC:1.14.13.39]
130565177  nos2b; nitric oxide synthase 2b, inducible [KO:K13241] [EC:1.14.13.39]
130552720  prdx2; peroxiredoxin-2 [KO:K13279] [EC:1.11.1.24]
130553983  prdx1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
130560511  ephx2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
130557711  gstk1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
130560253  xdh; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
130559219  dhrs4; dehydrogenase/reductase SDR family member 4 isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
tros00071  Fatty acid degradation
tros00120  Primary bile acid biosynthesis
tros00230  Purine metabolism
tros00564  Glycerophospholipid metabolism
tros00565  Ether lipid metabolism
tros00830  Retinol metabolism
tros00900  Terpenoid backbone biosynthesis
tros03320  PPAR signaling pathway
KO pathway
ko04146   
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