KEGG   PATHWAY: vri00040
Entry
vri00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Vitis riparia (riverbank grape)
Class
Metabolism; Carbohydrate metabolism
Pathway map
vri00040  Pentose and glucuronate interconversions
vri00040

Module
vri_M00081  Pectin degradation [PATH:vri00040]
Organism
Vitis riparia (riverbank grape) [GN:vri]
Gene
117933109  putative pectinesterase 63 [KO:K01051] [EC:3.1.1.11]
117933126  probable pectinesterase/pectinesterase inhibitor 17 [KO:K01051] [EC:3.1.1.11]
117933168  putative pectinesterase 63 [KO:K01051] [EC:3.1.1.11]
117933169  putative pectinesterase 63 [KO:K01051] [EC:3.1.1.11]
117933170  putative pectinesterase 63 [KO:K01051] [EC:3.1.1.11]
117934043  LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 59 [KO:K01051] [EC:3.1.1.11]
117934081  probable pectinesterase/pectinesterase inhibitor 33 [KO:K01051] [EC:3.1.1.11]
117934130  putative pectinesterase 63 [KO:K01051] [EC:3.1.1.11]
117934170  putative pectinesterase 63 [KO:K01051] [EC:3.1.1.11]
117911853  putative pectinesterase 11 [KO:K01051] [EC:3.1.1.11]
117912300  probable pectinesterase 53 [KO:K01051] [EC:3.1.1.11]
117924319  pectinesterase [KO:K01051] [EC:3.1.1.11]
117924609  pectinesterase [KO:K01051] [EC:3.1.1.11]
117924643  probable pectinesterase 53 [KO:K01051] [EC:3.1.1.11]
117924918  pectinesterase-like [KO:K01051] [EC:3.1.1.11]
117925148  pectinesterase-like [KO:K01051] [EC:3.1.1.11]
117914235  putative pectinesterase/pectinesterase inhibitor 28 [KO:K01051] [EC:3.1.1.11]
117914256  pectinesterase-like [KO:K01051] [EC:3.1.1.11]
117925554  putative pectinesterase 63 isoform X1 [KO:K01051] [EC:3.1.1.11]
117926817  pectinesterase/pectinesterase inhibitor PPE8B-like [KO:K01051] [EC:3.1.1.11]
117916351  pectinesterase 2-like [KO:K01051] [EC:3.1.1.11]
117927679  probable pectinesterase/pectinesterase inhibitor 25 [KO:K01051] [EC:3.1.1.11]
117916675  pectinesterase 2-like [KO:K01051] [EC:3.1.1.11]
117916807  pectinesterase 2-like [KO:K01051] [EC:3.1.1.11]
117916822  pectinesterase 2-like [KO:K01051] [EC:3.1.1.11]
117917684  probable pectinesterase/pectinesterase inhibitor 7 [KO:K01051] [EC:3.1.1.11]
117917698  probable pectinesterase 53 [KO:K01051] [EC:3.1.1.11]
117917976  pectinesterase-like [KO:K01051] [EC:3.1.1.11]
117930065  putative pectinesterase/pectinesterase inhibitor 28 [KO:K01051] [EC:3.1.1.11]
117930353  putative pectinesterase/pectinesterase inhibitor 22 [KO:K01051] [EC:3.1.1.11]
117930391  putative pectinesterase/pectinesterase inhibitor 28 isoform X1 [KO:K01051] [EC:3.1.1.11]
117930679  pectinesterase 31 isoform X1 [KO:K01051] [EC:3.1.1.11]
117907422  putative pectinesterase 11 [KO:K01051] [EC:3.1.1.11]
117919183  pectinesterase-like [KO:K01051] [EC:3.1.1.11]
117919252  pectinesterase [KO:K01051] [EC:3.1.1.11]
117931898  probable pectinesterase/pectinesterase inhibitor 36 [KO:K01051] [EC:3.1.1.11]
117908988  pectinesterase QRT1 [KO:K01051] [EC:3.1.1.11]
117932354  pectinesterase 2 [KO:K01051] [EC:3.1.1.11]
117934222  probable pectate lyase 4 [KO:K01728] [EC:4.2.2.2]
117923360  putative pectate lyase 2 [KO:K01728] [EC:4.2.2.2]
117912747  pectate lyase-like [KO:K01728] [EC:4.2.2.2]
117912783  pectate lyase-like [KO:K01728] [EC:4.2.2.2]
117914270  probable pectate lyase 8 [KO:K01728] [EC:4.2.2.2]
117915436  probable pectate lyase 5 [KO:K01728] [EC:4.2.2.2]
117927773  probable pectate lyase 4 isoform X1 [KO:K01728] [EC:4.2.2.2]
117928001  probable pectate lyase 5 [KO:K01728] [EC:4.2.2.2]
117904866  pectate lyase-like [KO:K01728] [EC:4.2.2.2]
117905241  probable pectate lyase 5 [KO:K01728] [EC:4.2.2.2]
117928754  probable pectate lyase 5 [KO:K01728] [EC:4.2.2.2]
117929849  pectate lyase-like [KO:K01728] [EC:4.2.2.2]
117929897  pectate lyase-like [KO:K01728] [EC:4.2.2.2]
117919438  probable pectate lyase 8 [KO:K01728] [EC:4.2.2.2]
117919641  probable pectate lyase 12 [KO:K01728] [EC:4.2.2.2]
117908859  probable pectate lyase 22 [KO:K01728] [EC:4.2.2.2]
117920565  probable pectate lyase 4 [KO:K01728] [EC:4.2.2.2]
117909979  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117909981  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910044  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910045  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910046  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910066  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910067  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910073  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117910075  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117920958  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117921052  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117921072  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117921225  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117921740  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117921741  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117921742  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117921743  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117922724  probable polygalacturonase At3g15720 isoform X1 [KO:K01184] [EC:3.2.1.15]
117922731  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117914213  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117914903  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117904322  probable polygalacturonase At3g15720 [KO:K01184] [EC:3.2.1.15]
117927977  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117928052  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117917507  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117906587  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117929816  polygalacturonase At1g48100 [KO:K01184] [EC:3.2.1.15]
117919065  polygalacturonase-like [KO:K01184] [EC:3.2.1.15]
117911868  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117923857  polygalacturonase At1g48100 [KO:K01213] [EC:3.2.1.67]
117914306  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117914431  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117914930  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117925819  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117925877  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117926007  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117926010  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117926014  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117927197  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117927801  polygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117918561  polygalacturonase At1g48100-like isoform X1 [KO:K01213] [EC:3.2.1.67]
117919259  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117908133  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117909290  exopolygalacturonase-like [KO:K01213] [EC:3.2.1.67]
117930928  glucuronokinase 1 [KO:K16190] [EC:2.7.1.43]
117906610  UDP-sugar pyrophosphorylase [KO:K12447] [EC:2.7.7.64]
117905173  UDP-glucose 6-dehydrogenase 1-like isoform X1 [KO:K00012] [EC:1.1.1.22]
117917961  UDP-glucose 6-dehydrogenase 3 [KO:K00012] [EC:1.1.1.22]
117930750  UDP-glucose 6-dehydrogenase 1 [KO:K00012] [EC:1.1.1.22]
117911981  UTP--glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
117921198  aldose reductase [KO:K00002] [EC:1.1.1.2]
117916974  aldo-keto reductase family 4 member C10-like [KO:K00002] [EC:1.1.1.2]
117919793  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117919927  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117919928  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117919929  NADPH-dependent aldo-keto reductase, chloroplastic-like isoform X1 [KO:K00002] [EC:1.1.1.2]
117920038  NADPH-dependent aldo-keto reductase, chloroplastic-like [KO:K00002] [EC:1.1.1.2]
117904359  ribulose-5-phosphate-3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
117930659  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
117906976  xylulose kinase 2 [KO:K00854] [EC:2.7.1.17]
117925428  xylose isomerase [KO:K01805] [EC:5.3.1.5]
117934002  sorbitol dehydrogenase [KO:K00008] [EC:1.1.1.14]
117924910  FGGY carbohydrate kinase domain-containing protein [KO:K00875] [EC:2.7.1.47]
117911659  D-ribulose kinase isoform X1 [KO:K22935] [EC:2.7.1.47]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
vri00010  Glycolysis / Gluconeogenesis
vri00020  Citrate cycle (TCA cycle)
vri00030  Pentose phosphate pathway
vri00052  Galactose metabolism
vri00053  Ascorbate and aldarate metabolism
vri00500  Starch and sucrose metabolism
vri00520  Amino sugar and nucleotide sugar metabolism
vri00561  Glycerolipid metabolism
vri00562  Inositol phosphate metabolism
vri00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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