Pseudomonas chlororaphis PA23: EY04_08530
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Entry
EY04_08530 CDS
T03201
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pch
Pseudomonas chlororaphis PA23
Pathway
pch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EY04_08530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pch03019
]
EY04_08530
03009 Ribosome biogenesis [BR:
pch03009
]
EY04_08530
Enzymes [BR:
pch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EY04_08530
Messenger RNA biogenesis [BR:
pch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EY04_08530
Ribosome biogenesis [BR:
pch03009
]
Prokaryotic type
rRNA processing factors
EY04_08530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AIC18941
LinkDB
All DBs
Position
complement(1895629..1898820)
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEASINQSSYEIAAAAAEAEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAAPVAAPAAVAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGR
QQSRNRNGRRDEERKPREERAPREERAPREAREERQPREVREAREEVQATAREERAPRPP
REERQPRPPREDRKPRGEREERVRELREPLDAAPAATAEERPARQPREERQPRPPREERQ
PRAEQAAAVAEEELLPNEEQLQEDGQENAEGDRPRRRSRGQRRRSNRRERQRDANGNVIE
GSEENSEEPSSADLAAGLAVTAAVASTVISAPAEAQAHEQAERATAAVQEAAPTVEAPVV
EATTAVEIPAAPAVEVAQAREEQREEQTAQPAVAAEQPAVVAEPVIEAPVAEAPAAEPAQ
EAPRAFERAAEAIVAEAPAPVAEVVADEPVVAEPVVAAPAAPVEAPAAEVAAPVVETAPV
SALTSTGRAPNDPREVRRRKREAERLQKEAELAAAAAAEAPVEAVVAAEPAPVVAEVVEA
APAAEPAIEQPAPAADEAPRSVEEVVEHKPKALEEEHEPKPLV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttc
ggctctgagcgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggcgaagagcgcaatgaactgcgcgaagccctgaacggcctggtagcccctgcc
gacatgggcctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactctggaccgccatcaaagaagcctcgctggaccgcgca
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtc
ccgctgttcaaccgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtc
gaactgccttccggtggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgtgccaccaaaggcagcgacatcgaggaaaccgccctgcagaccaat
ctggaagcagcggaagaaatcgctcgccaactgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgcccgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatcccttggcgaaagcagcggcatcgtc
tgcccacgctgcaacggcaccggcatcatccgcgacgtcgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaagtg
ccgattccggtcgcggccttcctgctcaacgaaaaacgcaattcgatcaccaagatcgaa
ctgcgcacccgtgctcgtatcgtcattctgccgaacgaccatctcgaaacgccgcacttc
gaagtccagcgtctgcgcgatgacagcccggaagccagcatcaaccagtccagctacgaa
atcgccgctgccgctgccgaagccgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagccgccgtcaagactgctccagcccgcgccaacgcaccggttccaacc
gaagttgccgcagctcctgttgccgccccggccgccgttgccgagccaagcctgttcaag
ggcctggtgaagtccctggtcagcctgttcgccaccaaggaagagccagccgctccggtc
gtagttgaaaaaccggccaccgaacgtcctgcgcgcaacgaagaacgccgcaacggtcgc
cagcagagccgcaaccgtaacggtcgccgcgacgaagaacgcaagccacgcgaagaacgc
gcccctcgtgaagagcgcgcaccgcgcgaagcccgcgaagagcgtcagccacgtgaagtc
cgcgaggctcgcgaggaagtccaggccaccgctcgcgaagagcgcgcgccgcgtccgcca
cgggaagagcgtcaaccacgcccaccacgcgaagaccgcaagccacgtggcgagcgtgaa
gagcgtgtgcgtgaactgcgcgaaccgctggacgccgctcctgccgctaccgctgaagag
cgtccggctcgccagccacgcgaagagcgtcaaccgcgtccaccgcgtgaagagcgtcaa
ccacgtgccgaacaggccgctgccgtcgctgaagaagagctgctgccgaacgaagagcaa
ctgcaggaagacggccaggagaacgccgaaggcgatcgtccacgccgccgctcccgtggc
cagcgtcgtcgcagcaaccgtcgtgagcgccagcgtgacgccaacggcaatgtgatcgaa
ggttcggaagagaacagcgaagagccaagcagcgccgatctggccgcaggcctggcggta
accgccgccgttgccagcaccgtgatcagcgccccggccgaagcccaggctcacgagcag
gccgaacgtgccaccgctgccgtccaggaagccgcaccgaccgtcgaagcaccggtcgtc
gaggccaccactgcggtagagattccagcagcaccggctgttgaagtcgcccaggcccgt
gaagaacagcgtgaagaacagaccgcgcaacctgctgttgctgcagaacaacccgcagtg
gttgccgagccagtgatcgaagcgccagtcgcagaagcaccagcggcagagccagcccag
gaagcgcctcgtgccttcgagcgtgccgccgaggcgatcgttgccgaagcgcctgcgcca
gtcgcagaagtcgtggctgatgagcctgtagttgccgagcctgtggttgccgcaccggca
gcaccggttgaagcacctgccgccgaagtggctgcgccggttgtcgagaccgctccggtc
agcgccctgaccagcaccggtcgcgcaccaaacgacccacgtgaagtgcgtcgtcgcaag
cgcgaagccgagcgtctgcagaaggaagccgaactggctgccgctgccgccgctgaagct
ccggtagaagccgtagtggctgccgagcctgcgccggtggttgccgaggtggtcgaggct
gctcctgctgccgaaccggccatcgagcaacctgcccctgctgccgacgaagccccgcgc
tccgtcgaagaagtggtagagcacaagccaaaggccctggaagaagagcacgagcctaaa
cctctcgtctga
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