Pseudomonas cichorii: PCH70_34730
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Entry
PCH70_34730 CDS
T03002
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCH70_34730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pci03019
]
PCH70_34730
03009 Ribosome biogenesis [BR:
pci03009
]
PCH70_34730
Enzymes [BR:
pci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PCH70_34730
Messenger RNA biogenesis [BR:
pci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCH70_34730
Ribosome biogenesis [BR:
pci03009
]
Prokaryotic type
rRNA processing factors
PCH70_34730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AHF68627
LinkDB
All DBs
Position
4130149..4133307
Genome browser
AA seq
1052 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASQDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRES
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHFEVQ
RLRDDSPEAHNNQTSYEIAAAAAEVEEMAPQAAATRTLVRQEAAVKTAPARANAPVPAQA
AAPVAAPVAHEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGRQQSR
GRNNRRDEERKPREERAPREERAERAPREERAPREERAPREPREVRDDSAPREERPARAP
REERAPRERKPREAREDRPVRELREPLDAAPAAAREERPERAPREERQPRQPREERQPRE
EQAAAAVSEEELLNNEELASEENQEGSEGERPRRRSRGQRRRSNRRERQRDANGNVIEGS
EENEGNDDAAQVVTAAVAAGVISAPAEAQANRQAEIANAATETPAETTAEEAPAPVVEAP
AAEAQPVEAQVVEAPAVEAPVAETAVKAEAAPEVEVQPAAVEAPVRAAQAELFEAPKAEN
VVPFTPTPEPTPEVAVEAPAAADVPATESTELPVPAPAAEPVLVQEEPAPYAAAPQAVEP
EPAPQAEPAPAVVAETPALPVSSNGRAPNDPREVRRRKREEEERRRQEAEQAAASSTEAA
PAEAVTEEKAEEAVAAQQQPQAKEETEPKPLV
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgctctggtagacggccagcgc
ctctacgacctggacatcgagtccggtgcacgcgagcagaagaaggccaatatctataaa
ggccggatcacccgcatcgagccaagcctggaggctgcctttgtcgatttcggctctgag
cgccacggcttcctgcccctcaaggaaatctcccgcgaatacttcaagaagtctcctgaa
ggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtccaggtcgaa
aaggaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctggctggccgc
tatctggtcctgatgcccaacaacccgcgtgccggtggcatttcgcgccgcatcgaaggc
gaagagcgcaacgaactgcgtgaagccctcaacggcctgatcgcacctgccgatatgggt
ctgatcgttcgcactgccggcctcggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactctggaccgccatcaaggaagcgtcccaggatcgtgccgcgcccttc
ctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggac
atcggtgaagtcctgatcgacagcatcgaagcccaggaagaagccctgaccttcatccgt
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgttccgctgttc
aaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtcgaactgcct
tccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgacatcaactcg
gcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaacctcgaagca
gccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatcgtcatcgac
ttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtccgcgaaagc
ctggaagctgaccgcgcccgcgttcaggtcggtcgcatctcgcgcttcggtctgctggaa
atgtcccgtcagcgcctgcgcccttccctgggtgaaagcagcggcatcgtctgcccgcgc
tgcaacggcaccggcatcatccgtgacgtcgagtccctgtcgctggctatcctgcgcctg
atcgaagaagaagccctgaaagaccgtactgccgaagtacgcgcccaggtgccgatcccg
gtcgcggccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcact
cgcgcccgcatcatcatcctgccgaacgatcatctggaaacgccgcacttcgaagtccag
cgtttgcgcgatgacagcccggaagcgcacaacaaccagaccagctacgaaatcgccgct
gccgctgccgaagtggaagaaatggcaccgcaagctgctgccacccgcaccctggttcgc
caggaagcggcggtcaagaccgcaccagcccgcgccaacgcaccggttccagcccaggct
gccgctccggttgcagcacctgtcgctcacgagccaagcctgttcaagggcctggtgaaa
tccctggtgagcctgttcgccaccaaggaagagcctgctgcaccggttgtcgtggaaaaa
ccggccaccgagcgccctgcccgcaacgaagagcgtcgcaacggtcgtcaacagagccgt
ggccgcaacaaccgccgcgacgaagagcgcaagccgcgtgaagaacgcgcacctcgcgaa
gagcgtgccgagcgcgccccacgcgaagaacgtgctcctcgtgaagaacgcgctccacgc
gaacctcgtgaagtccgtgacgattcggctccacgtgaagagcgtccggctcgcgcacca
cgcgaagaacgcgcacctcgtgagcgcaagccacgcgaagcacgtgaagaccgtccggta
cgtgaactgcgcgaacctctggatgcagcgccagccgccgcccgtgaagaacgccctgag
cgcgctccacgtgaagaacgccagccacgccagcctcgtgaagagcgtcagccacgcgaa
gagcaggccgcagcagcggtcagcgaagaagagttgctgaacaacgaagaactggccagc
gaagagaaccaggaaggcagcgaaggcgaacgccctcgtcgtcgctcccgcggtcagcgc
cgtcgcagcaatcgtcgtgagcgtcagcgtgacgccaacggcaatgtgatcgaaggctcc
gaagaaaacgaaggcaatgacgatgcagctcaggtcgtgactgctgcggtcgctgctggc
gtaatcagtgctccggccgaggcgcaagccaaccgccaggcagaaatcgccaacgcagca
actgaaacgcctgccgagacaactgccgaagaagcaccggcgcctgttgtcgaagcacct
gctgccgaagcccagccagtggaagctcaggttgtagaggccccggccgttgaagcacct
gttgccgaaactgctgtaaaagccgaagcagcgcctgaagtcgaagtgcaaccagcagca
gtcgaagccccggtacgtgcggcccaggctgaactgttcgaagcgccaaaggctgaaaat
gtcgtgccgttcacgccgacaccagagccgactccggaagttgcggtagaagcgcctgct
gcggcagacgtgccagcgaccgagtccaccgagctgccagtgcctgcaccagccgccgag
cctgtacttgttcaggaggagcctgctccttatgcagcagcaccacaagccgtggagcca
gagccggcaccgcaagcagagcctgctcctgccgtagtcgctgaaactccagcactgcca
gtcagcagcaatggtcgtgcaccgaacgatccacgcgaagttcgtcgccgcaagcgcgag
gaagaagagcgtcgtcgccaggaagctgaacaggctgctgccagcagcactgaagccgca
cctgccgaagcggtaaccgaagaaaaggccgaagaagccgttgctgcacagcaacagcct
caagccaaggaagagaccgagcctaaacctctcgtctga
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