Candidatus Sodalis pierantonius: SOPEG_2138
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Entry
SOPEG_2138 CDS
T03006
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pes
Candidatus Sodalis pierantonius
Pathway
pes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOPEG_2138 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pes03019
]
SOPEG_2138 (rne)
03009 Ribosome biogenesis [BR:
pes03009
]
SOPEG_2138 (rne)
Enzymes [BR:
pes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SOPEG_2138 (rne)
Messenger RNA biogenesis [BR:
pes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOPEG_2138 (rne)
Ribosome biogenesis [BR:
pes03009
]
Prokaryotic type
rRNA processing factors
SOPEG_2138 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AHF74023
UniProt:
W0HPI9
LinkDB
All DBs
Position
complement(2245434..2248961)
Genome browser
AA seq
1175 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPPQYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWQAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLA
KEHIASLGRPDFTSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NCLRESVRQDRARIQIGRISRFGLLELSRQRLSPSLGESSHHVCPRCGGTGTIRDNESLS
LSILRLIEEEALKENTLEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPNDQMQ
TPHYAVLRVRKGEEAPTLSYLLPQLHEVEMIQPSEEPAAERKRPEQPALAAFVMPDPPLA
SEKPAAAETVVQAAPAAAVKAAGASRGLFGRLVAGFKSLIGTPAQQTETNAAEAVVVEMP
PETETPRRQDRRGQRRQPSGRREHNNESTRAGQESRQPREGRDDTRRKRPQAVTETETEG
EMIGETQQEGQVQQSRREPRQDRQRRRQQEPKAQVAEQELKTLPAEIAPDDTASEEDKPI
QAQPRRQRRALNRKIRVGDRAAPTSDAAESATAAFNAAVESQDDDIGGLQSENDVALEAG
NADGGRNGNEAGLPRRSRRSPRHLRVSGQRRRRYRDERYPLSSPVPLTSAVVSPEMASGK
VWVSYPVTPIEQPEHDAGADVAAGTDATVGQKQAAFAVTPAGEAAAATVSEALNSQQLPP
STLIPSPAQEAAADDVPPVIAPGEQPMAQRQIERAEPAAGSAVTPTADDGDDVSQAPAQP
IAAPATPNAETAPLSLEQRDEERHADSVPASQPVTVHEEERSADLASPSQPVASHDDERP
VNSAQDVTPPETHDASRPDDTANADAVAVSEPFLGAALPPVVPAADGQNVGTAQPTPSAA
AEDAARHMPPPVSPPLTQEGRPLPVSPDTPAMRFKHHASAPMTKAPAPAYTPSPLPVSDW
QRPDYRFDDHGAAGGHAADKQATAPATRPDTPDPL
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcaacaggaggagttgcgcgttgctctggtagat
ggccagcggctgtatgacctagatattgagagccccgggcatgagcaaaaaaaagccaat
atctacaagggtaaaatcacccgtattgaacccagcctggaagcggcgtttgtggattat
ggcgccgagcgccacggtttccttcctcttaaagaaatttcccgcgagtactttcctcct
caatattcttcccatggcagacccaatatcaaggatgtgctgcgtgaaggtcaggaagtc
atcgtgcaggtggacaaagaggaacggggtaataaaggcgcggcgctgaccacctttatc
agcctggccggcagctatctggtgctgatgccgaacaatccgcgcgcgggcgggatttcg
cgccgtatcgaaggcgacgaccgcaccgagctgaaagaagcgctgtcctcccttgaacta
cctgacggtatggggcttatcgtccgcaccgccggcgtcggcaaatcggccgatgcgctg
caatgggatcttgcctttcgcctcaaacactggcaagcgataaagaaggccgccgaaggg
cgcccggcgccgtttttgattcaccaggaaagtaatgttatcgtccgcgctttccgcgat
tatttacggcccgatattggcgaaatcctgatcgataatcccaaagtgctggatctagcg
aaggagcatatcgcgtcgcttggccgcccggattttaccagtaagattaaactttacagc
ggtgaaatccccctgttcagccactaccagatcgaatcacagattgaatccgcatttcag
cgtgaagtgcgattgccctccggcggttccattgtcatcgacaccaccgaggcgcttacc
gctattgatatcaactccgcacgttcaacccgcggcggcgatattgaagaaaccgctttc
aataccaaccttgaagcggccgacgaaatcgcccgtcagctgcgtctgcgcgacctgggc
ggtctgatcgttatcgacttcatcgatatgacgccggtgcgccatcagcgggaagtggaa
aattgcctacgcgagtcggtgcgccaggatcgtgcccgtattcaaataggccgcatctcc
cgcttcggtctgctggagctctcccgtcagcgcctgagtccgtcactgggtgaatcgagc
catcacgtctgcccccgctgcggcggcaccggcaccatccgtgataacgaatccctttcc
ctttccatactgcggcttatcgaagaagaagcgctgaaagagaatactctcgaagttcat
gccattgtgccggttcccatcgcctcctatttgttaaacgagaagcgcgaagccgtcaac
gccatcgagaaacgtcaaggcggcgtacgggcgattatcgtcccgaacgatcaaatgcag
accccgcattatgcggtgttgcgcgtgcgcaaaggcgaagaggccccgacgctgagctat
ctgctgccacaattgcacgaagtggaaatgatccagccgtcggaggagcccgccgcagag
cgcaagcgccccgagcagccggcgctggcggcctttgtcatgcccgatccgccgctggcc
agcgagaaacccgccgccgctgaaaccgtggtgcaggcagcgcctgccgccgcggtaaag
gccgcgggcgcttcccgcggcttgttcggccgcctggtcgccggcttcaaatccctcatc
ggtacgccggcgcagcagacggaaaccaacgccgccgaagcggttgtcgttgagatgccg
cccgaaacggaaacgccgcgccgtcaggatcgccgcggtcaacgccgtcaaccgagtggc
cgacgcgagcacaataacgagtcgacccgcgccggtcaggaaagccgtcagccgcgcgaa
ggtcgcgacgatacgcgccgcaagcgtccccaggccgtcaccgagacggagaccgagggc
gagatgattggcgagactcagcaggaagggcaggtgcaacaatcgcgccgtgaaccccgc
caggatcgccaacggcgccgtcagcaggagccgaaagcgcaagtcgccgagcaggagttg
aaaacgctgccggccgagatagcgccagacgacaccgccagcgaggaagataaaccgatt
caggcccagccgcgccgccagcgtcgcgcgctgaaccgcaaaatccgcgtcggcgatcgg
gcagcgccgacatcagacgcggcggaaagcgctacggccgccttcaatgcggcggtggaa
agccaagatgacgatatcggcggtttgcaaagtgaaaatgatgtcgcgctcgaggccggc
aatgccgacggcggacgtaacggcaacgaggcgggcttgccgcgccgttcccgccgttca
ccccgtcatctgcgcgtcagcggtcaacgccgtcgccgctaccgtgacgaacgttatccg
ctctcatcgccggtaccgcttactagcgcggtagtgtcgccggaaatggcctcgggtaaa
gtctgggtgagctatcccgtcacccccattgagcaaccggaacatgacgccggcgccgat
gtggccgcgggtaccgatgccaccgtgggtcagaaacaggcggcgtttgccgttacgccg
gcgggcgaagccgcagccgcgacggtcagcgaggcgctgaacagccaacagctgccgccg
tcaacgctgataccgtcacctgcgcaggaagctgccgctgatgacgtaccgccggtgatc
gccccaggcgagcagccgatggcgcagcggcagatcgagcgggccgaaccggctgccggc
agcgccgtgacgccaacggctgatgatggcgacgatgtatcgcaagcgccagcacagcct
attgccgcaccggccacccccaacgccgaaaccgcaccgctgtcgcttgaacaacgcgat
gaagaacgtcatgccgattcggtgccggcgtcgcagccagtcacggttcacgaagaggag
cgttccgccgatttggcatcaccgtcgcagccggtcgcgtcccatgacgacgaacgtccg
gtcaactcggcgcaggacgttacgccgcctgagacgcacgatgcgtcacgccctgacgac
acagccaatgcggacgccgtcgccgtctccgagccgttcctcggcgctgcattgcccccg
gtcgttccggccgcggacggtcagaatgtcggcaccgcgcagccaacgccatccgctgcg
gctgaagacgccgcccgtcatatgccgccgcccgtcagcccgccgctgacgcaggaagga
cgtccgttgccggtatcgccagacacccccgcaatgcgcttcaagcatcatgccagcgcg
ccgatgaccaaagcgccagcgccggcctatacgccttcgccgctgccggtcagcgactgg
caacggccagattatcggttcgacgatcatggtgccgccggcggccacgccgcggataag
caggcgaccgccccggcaacccgtcctgacacgccggatccgctgtaa
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