Pseudomonas graminis: FX982_00035
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Entry
FX982_00035 CDS
T06934
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX982_00035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgg03019
]
FX982_00035
03009 Ribosome biogenesis [BR:
pgg03009
]
FX982_00035
Enzymes [BR:
pgg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FX982_00035
Messenger RNA biogenesis [BR:
pgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FX982_00035
Ribosome biogenesis [BR:
pgg03009
]
Prokaryotic type
rRNA processing factors
FX982_00035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QKF49121
UniProt:
A0A6M8MH81
LinkDB
All DBs
Position
30842..34198
Genome browser
AA seq
1118 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RESLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIIILPNDHLETPHF
EVQRLRDDSPEAHSLQTSYEIAAAAAEVEEVAPPAAATRTLVRQEAAVKTAPARANAPVP
VEAAAPVAAAPAPIAHEPSLFKGLVKSLVSLFASKEEPAAAAPAAVVEKPAAERPARNDE
RRNGRQQSRSRNGRRDEERKPREERAPRADREERAPREERAPREERAPREERAPREPREA
REETTAPREERQARAPREERQPRAGREDRKPREERVRELREPIDAAPAVNLPREERPERA
PREERQPRAPREERQPRAEQAVVAAEDETLLTSEEQQDDNQEHAEGDRPRRRSRGQRRRS
NRRERQRDANGNEIEGSEGVEGSEGSEAHDGESNEHSHESHDEVHANADRGDVAAGASVA
AVAERVISATAEADAHRQAERANTSVEARATEAAPVAQASKAAPEAPAVESPAPEAKRSV
MPEVEVATFDASLSPFERQVKAAAEAESTDTPASAETSVAVEAPAVVEAPAFMPTPALVH
EAVEVAVAEPVHVVEPVKAEHVQAAEPVQTAEPAEASELVQISEPAQAAEPVHAKASVID
APTVVEPVALQPVAAEPVIAPAVEAPAQTAAPEIVAAPVAVEPPQVPVAEPAKEETPALP
VASNGRAPNDPREVRRRRLEAERQQKEAQASDEPKPLV
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcgctggtagac
ggccagcgcctctacgacctggacatcgaatccggggcccgcgaacagaagaaggccaac
atctacaaaggccggatcacgcgtatcgaacccagccttgaagccgcgtttgtcgacttc
ggctccgagcgtcacggctttctgccgctgaaagaaatctcccgcgaatacttcaagaag
tcgcccgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgagaaagaagagcgtggcaacaagggcgctgccctgaccacgttcatcagcctc
gcaggccgctatctggtcctgatgccgaacaacccgcgtgccggcggcatctcccgtcgt
atcgaaggcgaagagcgtaacgaactgcgtgaagcgctgaacggcctgatcgcccctgcc
gacatgggtctgatcgttcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggaccgcgataaaagaggcctccctcgaccgctcc
gcgcccttcctgatctatcaggaaagcaacgtcatcatccgcgccatccgcgactatctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggaagaagcgctgacg
ttcatccgtcaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtc
gaactgccttccggtggctccatcgtcatcgatccgaccgaagcactggtgtccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaagagaccgccctgcagaccaac
cttgaagcggctgaggaaatcgcccgtcaactgcgtctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtc
cgtgaaagcctcgaagcggaccgtgcccgcgttcaggtcggtcgcatctcgcgcttcggc
ttgctggaaatgtcccgtcagcgtctgcgtccctccctgggcgagagcagcggtatcgtt
tgcccgcgttgcaacggcaccggcatcattcgtgacgttgaatcgctgtcgctggcgatc
ctgcgcctgattgaagaagaagcgctgaaagaccgcacggcagaagtgcgcgctcaagtg
ccgatcccggtcgctgcgttcttgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgcgcgcatcatcattctgccgaacgaccatctcgaaaccccgcacttc
gaagtgcagcgtctgcgtgatgacagtccggaagcccacagcctgcagaccagctatgaa
atcgctgccgctgctgctgaagtggaagaagttgcaccgcctgccgctgctacccgcacc
ctggttcgccaggaagcggcagtcaagaccgctccggcccgtgccaatgcaccggttccg
gtggaagccgctgcaccggttgccgctgcccctgcaccgattgcccacgagccaagcttg
ttcaaaggcctggtgaagtcgctggtcagcctgttcgcttccaaggaagagcctgcagct
gccgcacctgccgccgtggtcgaaaaaccggctgccgaacgtcctgcgcgcaacgacgag
cgccgtaatggccgtcagcagagccgcagccgtaacggccgtcgtgacgaagaacgcaag
ccgcgtgaagaacgtgcgccgcgtgccgatcgcgaagaacgcgcaccccgtgaagaacgt
gccccacgtgaggagcgcgcgccgcgtgaagagcgtgcaccgcgcgagccgcgtgaagcc
cgtgaagaaactaccgcaccgcgtgaagagcgtcaggcccgtgcgcctcgcgaagagcgt
cagccacgtgctgggcgtgaagaccgcaagccgcgtgaagagcgtgtgcgtgaactgcgt
gagccgatcgacgccgcaccggctgtcaacctgccccgcgaagaacgccctgagcgcgcc
ccgcgtgaagagcgtcagccgcgtgcgccgcgtgaagagcgtcaaccacgcgccgaacag
gctgtagtggctgctgaagacgaaaccctgctgaccagcgaagagcagcaggatgacaac
caggagcacgccgaaggcgatcgccctcgtcgtcgttcacgtggtcagcgtcgtcgcagc
aaccgtcgtgagcgccagcgtgatgccaatggcaatgaaatcgaaggcagcgaaggcgtt
gagggttcggaaggttctgaagcccacgacggcgaaagcaatgagcacagtcatgagtcc
catgacgaagtgcacgcgaacgccgaccgtggcgatgtcgctgccggtgcaagcgttgcg
gccgtagcggagcgcgtcatcagcgccaccgccgaagccgatgcccaccgtcaggctgaa
cgtgcgaacacgtccgttgaagcccgcgcgactgaagcagcaccggtggctcaggcctcc
aaagcagcgccagaagcgcccgccgtagagtcccctgcccctgaagccaagcgctcggtg
atgccggaagtggaagtggcaacattcgacgcctcactgagcccgttcgaacgccaggtg
aaagccgccgctgaagccgaatcgaccgacacgccagccagtgccgagacttcggtcgct
gttgaagcgcccgcggttgtggaagccccggcctttatgccgactcctgcgctggtgcat
gaggcggttgaagtcgccgtggctgagccggttcacgttgttgagcctgttaaagccgag
catgtccaggctgctgagcctgttcagacggccgagcctgccgaagcgtctgagctcgtt
cagatctctgaacctgctcaagccgccgagccagtgcacgccaaggcctcggtaatcgac
gcgccgaccgtggttgaacccgttgctctgcagcctgtggccgctgaaccagtcatcgcg
ccagccgtagaagcgccagctcagactgcagcgccggaaatcgtcgctgcgccagtcgct
gtcgaacctcctcaagtgccggttgcagaaccggccaaagaagagacgcctgcgctgccg
gttgccagcaatggccgtgcaccgaacgatccccgtgaagtgcgccgccgtcgtctggaa
gccgagcgtcagcagaaagaggcgcaagcctcggatgagcctaaaccgctcgtttaa
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