Providencia hangzhouensis: PZ638_08950
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Entry
PZ638_08950 CDS
T09403
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phag
Providencia hangzhouensis
Pathway
phag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZ638_08950 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phag03019
]
PZ638_08950 (rne)
03009 Ribosome biogenesis [BR:
phag03009
]
PZ638_08950 (rne)
Enzymes [BR:
phag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PZ638_08950 (rne)
Messenger RNA biogenesis [BR:
phag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PZ638_08950 (rne)
Ribosome biogenesis [BR:
phag03009
]
Prokaryotic type
rRNA processing factors
PZ638_08950 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
WNK25975
UniProt:
A0AA96HY81
LinkDB
All DBs
Position
complement(2020349..2023627)
Genome browser
AA seq
1092 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLQIPDGMGLIVRTAGVGKSAESL
QQDLLYRLRHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMA
RNHIEAIGRGDFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVSDIEQRQSHVRVVIVPNDQMQ
TPHFHVIRIRKGEEVNTLSYNLAQYHETVTLTQSDETTAERKIPEQPAISAFALQEPVDM
STVKPKETATKAPVKSVATEPASPGLFSKIAAFFKNLFGEEEKVVEKPAPKNRNNNDRRR
NNDRRNNNRRNNNRRDRDENETRDNRDNRDNRNNRNTSSDDANTRNKGRNNKNTSQQDEQ
ATESNNRDNQQQRREQRAERRRRQDEKRQQQVAKTQQDAQQSHVEDAVEKEEEQRPVAPR
RQRRQLAQKIRVTDSEQIITPVETAPEVTTEPVAALPAPTVSVNQTEGEVQTEERQEAVA
QVDGEEKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLTKSPMPLIAAVASPELASGKV
FIHYPIAQPQQESMAIITNEEMLEQQSVNEASVAETSNVTASQSHVIVSPVVAEEVKHEV
QDTATEMVNVEETPLVNEATVVERIVEPTPVVVEEKTDVSQEIETVEAVKETVEIVAEVI
EPQVEIAQTEVVESVSIADEQTTPVIVNEVVEEIQLPQVSVTASAEVVSVEEVIEPVAVA
EPATVASSPAVSLHKRHAYSPMTKAPAPASAAAPFEITEYQREASTFEGKGGAGGHVASN
VATSAMAKPSSH
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcaactcaacaggaagagttgcgtgttgcccttgttgac
gggcaacgtctctatgatttggatattgaaagtcccggtcatgagcaaaaaaaggccaat
atttacaaaggtaaaatcactcgtatcgaacctagtcttgaagctgcttttgttgactat
ggcgctgaaagacacggtttccttcctatcaaagaaatcgctcgtgaatacttcccaagc
aactatcactcccaaggccgtcctaacattaaagatgtgttaaaagaaggccaagaagtt
atcgttcaagtggataaagaagagcgtggaaataaaggtgccgcattaaccaccttcatt
agcttggcaggaagttacctcgttttaatgccaaataacccacgtgcgggaggcatttca
cgtcgtatcgaaggcgaagaccgcactgagctaaaagaagcgctgtcttctttacaaatt
ccagatggcatgggcttaatcgttcgcaccgcgggtgtgggtaaatctgcagaatcactg
caacaagatttgctttaccgtttacgtcactgggaagcgattcaaaaagccgctgaaaac
cgccctgcacctttcttaatccaccaagaaagtaacgttattgttcgtgcattccgtgat
tatctacgcccagatatcggtgagatcctaatagataacccgaaagttgtcgaaatggca
cgcaaccatatcgaagctatcggtcgtggtgattttgcaagcaaaatcaaacactatagt
ggcgatgttccactttttagccactaccaaattgaatcacaaatcgaatctgcgttccaa
cgcgaagttcgtttgccatcaggtggtgcattagttattgataccactgaagctctgacc
gctatcgatatcaactcctcacgttcaacacgtggtggcgatatcgaagaaactgcgttc
aatactaacttagaagcggctgatgaaattgcacgtcaattacgtctacgtgacctaggt
ggtttgattgttatcgattttatcgatatgacgccagttaggcatcaacgtgaagtagaa
aaccgcttacgtgaagctgtacgccaagaccgtgctcgcattcaaattgcacgcatctct
cgttttggtttattagaaatgtcacgtcagcgcttgagcccatcgttaggtgaatccagc
catcacgtgtgtcctcgctgttcaggaacgggaaccattcgtgataacgaatcactttcc
ctgtctgttcttcgccttatcgaagaagaggcactgaaagaaaatactcacgaagtgcat
gccattgttcctgtacaaattgcatcttacctattgaatgaaaagcgtaaagccgttagt
gatatcgaacaacgccaaagccatgttcgcgttgtgattgtccctaatgaccaaatgcaa
acgcctcacttccatgtgatccgcattcgtaaaggtgaagaggtaaatactttaagctat
aacttagctcaatatcacgaaaccgtcactttgacacaaagtgacgagactaccgctgag
cgcaaaatccctgagcaacctgcaatttcagcttttgcactgcaagagcctgtagacatg
tctacagtgaagccaaaagaaactgcaacaaaagcaccagtaaaatcagtggcaactgaa
cctgcatccccaggtttgttcagcaaaattgcggctttcttcaagaacctatttggtgaa
gaagaaaaagtggttgagaaaccagcgccgaaaaaccgcaataataatgaccgccgccgt
aacaatgatcgtcgcaataataatcgccgtaataataatcgtcgtgatcgcgatgaaaat
gaaacacgcgataatcgtgacaaccgtgataatcgcaataaccgtaatacgtcatcggat
gatgcgaacactcgtaataaaggccgtaataataaaaatacgagccagcaagatgagcaa
gcaactgagtctaacaatcgtgacaaccagcagcaacgtcgcgaacaacgtgctgagcgt
cgtcgtcgccaagacgaaaaacgtcaacagcaagtggccaaaactcaacaagatgctcag
caaagtcatgtcgaagatgcggtggaaaaggaagaagaacaacgtccggttgccccacgt
cgtcaacgtcgccaattagcacaaaaaatccgtgttactgatagcgagcaaatcattact
cctgttgaaacggcacctgaagtaaccactgagccagttgcagcattacctgcaccaacg
gtatctgtgaaccaaactgaaggtgaagtacaaactgaagagcgtcaagaagccgtggct
caagttgatggtgaagaaaaacaagacaccatcattccacgccgttctcgtcgttcacct
cgtcacttgcgtgtcagtggtcaacgtcgtcgtcgctaccgtgatgagcgccatttaact
aaatcaccaatgccattaatcgctgccgttgcctcaccagagcttgcgtctggcaaagta
tttattcattacccgattgctcagcctcaacaagaaagcatggcaatcatcaccaatgaa
gaaatgcttgaacaacaaagtgttaatgaagcttctgtagctgaaacctcaaatgttacc
gcgtcacaaagccacgtaattgtctctccagtcgtggctgaagaggttaaacacgaggta
caagacaccgctacagaaatggttaatgtagaagaaaccccattagttaacgaagcaaca
gttgttgaacgcattgtcgaaccaactccagttgttgtcgaagagaaaactgatgtttcg
caagaaattgaaaccgtcgaagctgtaaaagagactgtagaaatagtggctgaagttatt
gagccacaggttgaaatagctcaaacagaagtagttgaaagcgtttctattgcggacgaa
caaacaacgcctgttattgtcaatgaagtcgttgaagaaatacaacttcctcaagtttct
gtcacggcatcagccgaggtagtcagtgtcgaggaagttatcgaacctgttgccgtagct
gaaccagcaacggtagcaagcagcccagcggtcagcttacataaacgtcatgcttattct
ccaatgacaaaagcgcccgcacctgcaagtgctgctgcaccatttgagatcactgagtat
cagcgtgaagcctcaacctttgaaggtaaaggcggcgcaggtggtcatgttgcttcaaac
gtagcaacctctgcaatggcaaaaccatctagtcactaa
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