Pelagibacterium halotolerans: KKY_1548
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Entry
KKY_1548 CDS
T01645
Name
(GenBank) cytoplasmic axial filament protein CafA and ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKY_1548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phl03019
]
KKY_1548
03009 Ribosome biogenesis [BR:
phl03009
]
KKY_1548
Enzymes [BR:
phl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KKY_1548
Messenger RNA biogenesis [BR:
phl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KKY_1548
Ribosome biogenesis [BR:
phl03009
]
Prokaryotic type
rRNA processing factors
KKY_1548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AEQ51565
UniProt:
G4RAL2
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All DBs
Position
1538491..1541085
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AA seq
864 aa
AA seq
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MATKRMLVDATHPEETRIVVTTGNRLEEFDFESAERRQLRGNIYLAKVTRVEPSLQAAFV
EYGGNRHGFLAFSEIHPDYYQIPVADREALMRDEEEAHEEEADLADDDETDATESDDDAA
EDNGDDLDTPRETKKVEQIGEGDALEDLQERPRRNQRRYKIQEVIKRRQVLLVQVVKEER
GNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITSAADRKRLKEIATDLEVPQGMGVIL
RTAGASRTKAEVKRDFEYLMRLWENVRTLTLESSAPCLVYEEGSLIKRTIRDLYNKDISE
VLVSGEAGYREAKDFMRMIMPSHSKNVQIYKDDAPIFSRFNVESQLDSMFHPQVTLPSGG
YIVINPTEALVSIDVNSGRATKEHNIEDTALQTNLEAAEEISRQLRLRDLAGLIVIDFID
MEERRNNRAVEKKLKDCLKNDRARIQVGHISHFGLMEMSRQRIRFGVLESSTHTCPTCAG
TGLVRSVSSLALMIMRAIEDHVLRKPGQSINVNMPAEVALYILNTKRETLTALEAKYGLS
ITISAQSGLVGSQFNIERGEARAPVAAAPVQHIRADAASLDDYQEPEVEEEAEAETEIAA
EDETGGERDGNRNKRRRRRRRGGKDNAAIQATEVATPDAESGDTEDEPRADAANEDDDDQ
PRKRRRRGRRGGRRNKRPNEGFGTDQDSDAPGDADAMNAVEDREPAVASQVEDAPAPDAA
PETEVVAEAAEEKPKKRRTRKTTKAKAAEPDSVAQEAVEGAEEAPAAEPAPAPEKPARKP
RAPRKKKVEAEAPAQEKPAEAPQQEKASEPVAADAQPEAAAEDKSAARKKKAVPSDEILV
SSTSETTEEKPKKAGWWQRRLGLG
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaaagaatgttggtggatgccacccacccggaagaaacacggattgtcgtt
accacaggtaacagactcgaggagttcgactttgaatccgccgaacggcggcagttaagg
ggcaatatctatctcgccaaggtgacgcgggtcgagccttcccttcaggctgccttcgtc
gaatatggcggcaatcgtcacggcttcctcgccttttccgaaatccaccccgactactac
cagattccggtcgccgaccgcgaagctctcatgcgcgacgaagaagaagcccatgaggaa
gaggccgatctcgccgacgatgacgagaccgacgccaccgaaagtgacgacgacgccgcc
gaggacaatggcgacgatctcgatacgccgcgcgaaaccaaaaaggtcgagcagatcggc
gaaggcgacgccctcgaagaccttcaggagcgcccccgtcgcaatcagcgccgctacaag
atccaggaagtcatcaagcgccgtcaggtcctgctcgtgcaggtcgtcaaggaagagcgc
ggcaacaagggtgctgcactcaccacctatctctcgctggccggccgctactcggttctg
atgcccaacacggcgcgtggcggcggcatttcgcgcaagatcaccagcgctgccgaccgc
aagcgtttgaaggaaatcgccaccgatctcgaagtgccccagggcatgggcgtcatcctg
cgcactgccggcgcctcgcgcaccaaggccgaggtcaagcgcgatttcgaatatctcatg
cgcttgtgggaaaatgtacgcaccctgacgctcgaatcctcggcgccctgtctcgtttat
gaggaaggcagcctcatcaagcgcacgatccgcgacctctataacaaggatatctccgaa
gtccttgtgtccggcgaggccggatatcgcgaggccaaggatttcatgcgcatgatcatg
cccagccattccaagaatgtgcagatctataaggatgatgcgccgatcttttcgcgtttc
aatgtagagtcccaactcgactccatgttccatccgcaggtgaccctgccctcgggcggt
tacatcgtcatcaacccgaccgaagcgttggtgtcgatcgacgtgaactcgggccgcgcc
accaaggaacacaacatcgaggacaccgccctccagaccaatctggaagcggccgaggag
atttcccgccagttgcgcctgcgcgatctggccggcctcatcgtcatcgatttcatcgac
atggaagagcgccgcaacaaccgcgctgtcgagaaaaagctcaaggactgcctcaagaac
gaccgcgcccgcatccaggtcggccacatcagccatttcggcctgatggaaatgagccgc
cagcgcatccgtttcggcgtcctggaatcctcgacccacacctgccccacctgcgcgggc
accggtcttgtgcgttcggtctcttcgctcgcgctgatgatcatgcgcgccattgaagat
cacgttctgcgcaagccgggccagtcgatcaacgtcaacatgcccgccgaggtcgcgctc
tatatcctcaacaccaagcgcgaaacgctgacggcgctcgaagccaaatacgggctctcg
atcaccatttccgcccagagcggccttgtcggctcccagttcaacatcgaacgcggcgag
gcccgtgcgccggttgccgccgcgcctgtccagcacatccgtgccgatgcggcgtccctg
gacgactaccaggaacctgaagtcgaggaagaagccgaggccgaaaccgagatcgctgcg
gaagacgaaacgggcggtgagcgtgatggcaatcgcaacaagcgccgccgtcgccgccgc
cgcggcggcaaggataacgcagcgatccaggccaccgaggtcgcaacccccgatgccgaa
tccggcgataccgaagatgaaccgcgcgccgatgccgccaatgaggacgatgacgaccag
ccgcgcaagcgccgccggcgcggacgccgtggcgggcgccgcaacaaacgccccaacgag
ggctttggaacggatcaggatagcgatgcgccgggtgatgccgacgccatgaacgccgtc
gaagaccgcgagcctgccgtcgcatctcaggtcgaagatgctcccgcgcccgacgccgca
ccggaaaccgaagtggtcgccgaggccgcagaggaaaagccgaaaaagcgccgcacgcgc
aagaccacgaaggccaaggccgccgagcccgattcggtagcccaggaagccgtggaaggc
gccgaggaagcgcctgcggccgagcctgcgccggcccctgaaaagccggcccgcaagccc
cgcgctccgcgcaagaaaaaggtcgaggccgaagctcccgcgcaagaaaagcccgccgaa
gcgccccagcaggaaaaagcatctgagcccgttgctgcggatgcccagcctgaggccgcc
gcggaggacaaatccgcggcccgcaagaaaaaggctgtgccgtccgacgagattcttgtc
tcctcgacgagcgaaacgaccgaagaaaagcccaaaaaggccggctggtggcagcgccgc
ctcggtctgggctaa
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